HL_8QU1_015

3D structure

PDB id

8QU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

GAUCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QU1_015 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.105

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8QU1|1|A|G|2349
8QU1|1|A|A|2350
8QU1|1|A|U|2351
8QU1|1|A|C|2357
8QU1|1|A|A|2358
8QU1|1|A|C|2364

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain O

39S ribosomal protein L17, mitochondrial

Chain T

39S ribosomal protein L22, mitochondrial

Chain U

39S ribosomal protein L23, mitochondrial