8QU1 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8QU1_001 | 1/A/1746:1752 | No text annotation | geometric HL_7A0S_008 HL_76371.3 | |
| HL_8QU1_002 | 1/A/1786:1791 | GNRA | homologous HL_7RQB_015 NA | |
| HL_8QU1_003 | 1/A/1831:1839 | No text annotation | homologous HL_7RQB_017 NA | |
| HL_8QU1_005 | 1/A/1884:1889 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_8QU1_010 | 1/A/2129:2136 | No text annotation | homologous HL_4WF9_028 HL_47171.2 | |
| HL_8QU1_013 | 1/A/2279:2286 | No text annotation | geometric HL_5E6M_002 HL_55735.1 | |
| HL_8QU1_014 | 1/A/2319:2324 | No text annotation | geometric HL_5TBW_075 NA | |
| HL_8QU1_021 | 1/A/2862:2870 | No text annotation | geometric HL_2ZZM_002 HL_33487.2 | |
| HL_8QU1_023 | 1/A/3154:3159 | No text annotation | geometric HL_5FMZ_001 HL_91813.1 | |
| HL_8QU1_024 | 1/A/3176:3193 | No text annotation | geometric HL_7A0S_074 NA | |
| HL_8QU1_025 | 1/A/3216:3224 | No text annotation | geometric HL_7RQB_068 NA | |
| HL_8QU1_027 | 1/B/1630:1638 | tRNA anticodon loop | geometric HL_4TUE_034 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8QU1_004 | No text annotation | ||
| HL_8QU1_006 | No text annotation | ||
| HL_8QU1_007 | No text annotation | ||
| HL_8QU1_008 | No text annotation | ||
| HL_8QU1_009 | GNRA | ||
| HL_8QU1_011 | No text annotation | ||
| HL_8QU1_012 | GNRA with tandem sheared | ||
| HL_8QU1_015 | No text annotation | ||
| HL_8QU1_016 | Mini UNCG | ||
| HL_8QU1_017 | No text annotation | ||
| HL_8QU1_018 | No text annotation | ||
| HL_8QU1_019 | No text annotation | ||
| HL_8QU1_020 | No text annotation | ||
| HL_8QU1_022 | GNRA | ||
| HL_8QU1_026 | tRNA D-loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8QU1_002 | 1/A/1682:1683, 1/A/1768:1770 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_8QU1_003 | 1/A/1739:1745, 1/A/1753:1758 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_5J7L_251 NA | |
| IL_8QU1_004 | 1/A/1845:1847, 1/A/1856:1858 | Isolated non-canonical cWW pair | homologous IL_5J7L_257 NA | |
| IL_8QU1_005 | 1/A/1877:1879, 1/A/1895:1897 | Isolated non-canonical cWW pair | geometric IL_3GM7_002 IL_01003.5 | |
| IL_8QU1_006 | 1/A/1880:1883, 1/A/1890:1894 | No text annotation | ||
| IL_8QU1_007 | 1/A/1904:1906, 1/A/2016:2018 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_8QU1_008 | 1/A/1906:1910, 1/A/2009:2016 | No text annotation | ||
| IL_8QU1_009 | 1/A/1913:1915, 1/A/2004:2006 | Isolated non-canonical cWW pair | geometric IL_5TBW_079 NA | |
| IL_8QU1_010 | 1/A/2046:2048, 1/A/2091:2094 | No text annotation | geometric IL_4N0T_004 IL_32983.2 | |
| IL_8QU1_011 | 1/A/2057:2063, 1/A/2076:2082 | No text annotation | geometric IL_5XWG_002 IL_74768.1 | |
| IL_8QU1_012 | 1/A/2145:2147, 1/A/2254:2255 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_8QU1_013 | 1/A/2149:2153, 1/A/2248:2252 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_8QU1_017 | 1/A/2306:2313, 1/A/2674:2680 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_8QU1_031 | 1/A/2330:2333, 1/A/2441:2447 | No text annotation | ||
| IL_8QU1_032 | 1/A/2377:2381, 1/A/2411:2419 | No text annotation | ||
| IL_8QU1_033 | 1/A/2384:2400, 1/A/2403:2408 | No text annotation | ||
| IL_8QU1_019 | 1/A/2456:2461, 1/A/2666:2668 | No text annotation | ||
| IL_8QU1_020 | 1/A/2467:2469, 1/A/2658:2660 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.2 | |
| IL_8QU1_021 | 1/A/2470:2473, 1/A/2656:2657 | Major groove platform; stack outside cWW | homologous IL_4WF9_064 IL_74641.3 | |
| IL_8QU1_022 | 1/A/2712:2715, 1/A/3104:3106 | No text annotation | geometric IL_6DME_003 IL_75527.3 | |
| IL_8QU1_034 | 1/A/2744:2747, 1/A/2801:2803 | No text annotation | ||
| IL_8QU1_026 | 1/A/2856:2860, 1/A/2872:2876 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 NA | |
| IL_8QU1_027 | 1/A/3115:3117, 1/A/3139:3141 | No text annotation | geometric IL_2ZNI_001 NA | |
| IL_8QU1_028 | 1/A/3119:3126, 1/A/3131:3137 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_8QU1_029 | 1/A/3148:3152, 1/A/3161:3163 | C-loop | geometric IL_7RQB_051 NA | |
| IL_8QU1_030 | 1/B/1627:1629, 1/B/1639:1641 | Isolated cWH basepair | geometric IL_3D0M_002 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8QU1_001 | No text annotation | ||
| IL_8QU1_014 | Isolated non-canonical cWW pair | ||
| IL_8QU1_015 | No text annotation | ||
| IL_8QU1_016 | No text annotation | ||
| IL_8QU1_018 | No text annotation | ||
| IL_8QU1_023 | Single bulged U | ||
| IL_8QU1_024 | Minor groove platform | ||
| IL_8QU1_025 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8QU1_001 | 1/A/1678:1681, 1/A/1771:1785, 1/A/1792:1797 | No text annotation | ||
| J3_8QU1_002 | 1/A/2336:2343, 1/A/2423:2427, 1/A/2436:2438 | No text annotation | ||
| J3_8QU1_003 | 1/A/2343:2345, 1/A/2368:2375, 1/A/2421:2423 | No text annotation | ||
| J4_8QU1_001 | 1/A/2314:2317, 1/A/2326:2327, 1/A/2450:2453, 1/A/2671:2673 | No text annotation | ||
| J4_8QU1_002 | 1/A/2336:2345, 1/A/2368:2375, 1/A/2421:2427, 1/A/2436:2438 | No text annotation | ||
| J5_8QU1_001 | 1/A/1827:1829, 1/A/1841:1845, 1/A/1858:1860, 1/A/2305:2306, 1/A/2680:2681 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_8QU1_002 | 1/A/1865:1875, 1/A/1899:1903, 1/A/2019:2022, 1/A/2271:2275, 1/A/2290:2300 | No text annotation | ||
| J6_8QU1_001 | 1/A/2027:2032, 1/A/2043:2045, 1/A/2095:2098, 1/A/2123:2127, 1/A/2138:2143, 1/A/2257:2266 | No text annotation |
Problematic loops
No problematic loops
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