HL_8QU1_024
3D structure
- PDB id
- 8QU1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- AAUGAUAUCAUCUCAACU
- Length
- 18 nucleotides
- Bulged bases
- 8QU1|1|A|U|3183, 8QU1|1|A|C|3187, 8QU1|1|A|C|3189
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QU1_024 not in the Motif Atlas
- Geometric match to HL_7A0S_074
- Geometric discrepancy: 0.3497
- The information below is about HL_7A0S_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_28904.1
- Basepair signature
- cWW-F-F-tWH-cWH-tSH-tHW-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8QU1|1|A|A|3176
8QU1|1|A|A|3177
8QU1|1|A|U|3178
8QU1|1|A|G|3179
8QU1|1|A|A|3180
8QU1|1|A|U|3181
8QU1|1|A|A|3182
8QU1|1|A|U|3183
8QU1|1|A|C|3184
8QU1|1|A|A|3185
8QU1|1|A|U|3186
8QU1|1|A|C|3187
8QU1|1|A|U|3188
8QU1|1|A|C|3189
8QU1|1|A|A|3190
8QU1|1|A|A|3191
8QU1|1|A|C|3192
8QU1|1|A|U|3193
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain K
- 39S ribosomal protein L13, mitochondrial
Coloring options: