HL_8QU5_008

3D structure

PDB id

8QU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

UCUUAG

Length

6 nucleotides

Bulged bases

8QU5|1|A|C|2036, 8QU5|1|A|A|2039

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QU5_008 not in the Motif Atlas

Homologous match to HL_5J7L_157

Geometric discrepancy: 0.132

The information below is about HL_5J7L_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

8QU5|1|A|U|2035
8QU5|1|A|C|2036
8QU5|1|A|U|2037
8QU5|1|A|U|2038
8QU5|1|A|A|2039
8QU5|1|A|G|2040

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

39S ribosomal protein L15, mitochondrial