HL_8QU5_016
3D structure
- PDB id
- 8QU5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- GAUCAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QU5_016 not in the Motif Atlas
- Geometric match to HL_5NFV_001
- Geometric discrepancy: 0.1466
- The information below is about HL_5NFV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.4
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 7
Unit IDs
8QU5|1|A|G|2349
8QU5|1|A|A|2350
8QU5|1|A|U|2351
8QU5|1|A|C|2357
8QU5|1|A|A|2358
8QU5|1|A|C|2364
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain O
- 39S ribosomal protein L17, mitochondrial
- Chain T
- 39S ribosomal protein L22, mitochondrial
- Chain U
- 39S ribosomal protein L23, mitochondrial
- Chain d
- 39S ribosomal protein L45, mitochondrial
Coloring options: