HL_8QU5_022
3D structure
- PDB id
- 8QU5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- UUGGGGCGA
- Length
- 9 nucleotides
- Bulged bases
- 8QU5|1|A|G|2814
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QU5_022 not in the Motif Atlas
- Homologous match to HL_5J7L_186
- Geometric discrepancy: 0.1886
- The information below is about HL_5J7L_186
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_85367.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8QU5|1|A|U|2812
8QU5|1|A|U|2813
8QU5|1|A|G|2814
8QU5|1|A|G|2815
8QU5|1|A|G|2816
8QU5|1|A|G|2817
8QU5|1|A|C|2818
8QU5|1|A|G|2819
8QU5|1|A|A|2820
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain N
- 39S ribosomal protein L16, mitochondrial
- Chain W
- 39S ribosomal protein L27, mitochondrial
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