HL_8QU5_029
3D structure
- PDB id
- 8QU5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- CAAGAACAG
- Length
- 9 nucleotides
- Bulged bases
- 8QU5|1|A|A|3217
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QU5_029 not in the Motif Atlas
- Geometric match to HL_7RQB_068
- Geometric discrepancy: 0.1049
- The information below is about HL_7RQB_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_64690.1
- Basepair signature
- cWW-cSW-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8QU5|1|A|C|3216
8QU5|1|A|A|3217
8QU5|1|A|A|3218
8QU5|1|A|G|3219
8QU5|1|A|A|3220
8QU5|1|A|A|3221
8QU5|1|A|C|3222
8QU5|1|A|A|3223
8QU5|1|A|G|3224
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 0
- 39S ribosomal protein L32, mitochondrial
- Chain E
- 39S ribosomal protein L3, mitochondrial
- Chain O
- 39S ribosomal protein L17, mitochondrial
- Chain Q
- 39S ribosomal protein L19, mitochondrial
Coloring options: