HL_8QYX_006

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CG(PSU)GG

Length

5 nucleotides

Bulged bases

8QYX|1|A2|PSU|224, 8QYX|1|A2|G|225

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_006 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.0639

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8QYX|1|A2|C|222
8QYX|1|A2|G|223
8QYX|1|A2|PSU|224
8QYX|1|A2|G|225
8QYX|1|A2|G|226

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F2

60S ribosomal protein L4

Chain S1

60S ribosomal protein L26