RNA 3D Hub //

8QYX Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8QYX_0011/A2/37:44No text annotation
homologous
HL_8P9A_113
HL_48677.1
HL_8QYX_0021/A2/68:73No text annotation
homologous
HL_8C3A_002
NA
HL_8QYX_0031/A2/89:95No text annotation
homologous
HL_8C3A_003
NA
HL_8QYX_0051/A2/204:211T-loop with 2 bulged bases not stacked
geometric
HL_1P6V_004
NA
HL_8QYX_0061/A2/222:226No text annotation
geometric
HL_5J7L_143
NA
HL_8QYX_0071/A2/230:238T-loop with unstacked turn
homologous
HL_8P9A_119
HL_27670.3
HL_8QYX_0081/A2/289:298No text annotation
homologous
HL_8C3A_008
NA
HL_8QYX_0091/A2/314:323Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_8QYX_0101/A2/368:373GNRA
homologous
HL_8P9A_122
HL_34789.1
HL_8QYX_0111/A2/393:398GNRA
homologous
HL_8C3A_011
NA
HL_8QYX_0121/A2/1171:1190No text annotation
HL_8QYX_0131/A2/1248:1262No text annotation
HL_8QYX_0141/A2/1317:1326T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_8QYX_0151/A2/1364:1373No text annotation
HL_8QYX_0161/A2/1389:1394GNRA
homologous
HL_8C3A_016
NA
HL_8QYX_0181/A2/1436:1448Externally structured
geometric
HL_8C3A_022
NA
HL_8QYX_0191/A2/1480:1484Mini UNCG
geometric
HL_5SWD_005
HL_90436.1
HL_8QYX_0201/A2/1561:1566Mini UNCG
geometric
HL_4YAZ_004
HL_90436.1
HL_8QYX_0211/A2/1593:1602No text annotation
homologous
HL_8P9A_132
HL_50204.1
HL_8QYX_0221/A2/1627:1635No text annotation
homologous
HL_8P9A_133
HL_79004.1
HL_8QYX_0231/A2/1675:1680Externally structured
homologous
HL_8C3A_022
NA
HL_8QYX_0241/A2/1753:1777No text annotation
HL_8QYX_0251/A2/1816:1823No text annotation
homologous
HL_8C3A_024
NA
HL_8QYX_0261/A2/1864:1870GNRA
homologous
HL_8P9A_137
HL_34789.1
HL_8QYX_0271/A2/1886:1893No text annotation
homologous
HL_8P9A_138
HL_47171.1
HL_8QYX_0291/A2/2257:2261Mini UNCG
geometric
HL_4V9F_041
HL_90436.1
HL_8QYX_0301/A2/2317:2322GNRA
homologous
HL_8P9A_142
HL_34789.1
HL_8QYX_0311/A2/2376:2384T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_8QYX_0321/A2/2420:2426Pseudoknot geometry with 3' bulge
homologous
HL_8C3A_032
NA
HL_8QYX_0331/A2/2458:2463GNRA variation
homologous
HL_8C3A_033
NA
HL_8QYX_0341/A2/2469:2471No text annotation
HL_8QYX_0361/A2/2523:2532No text annotation
homologous
HL_8P9A_146
HL_77449.1
HL_8QYX_0381/A2/2578:2583GNRA
homologous
HL_8C3A_036
NA
HL_8QYX_0391/A2/2624:2632Pseudoknot geometry
homologous
HL_8P9A_148
HL_68642.1
HL_8QYX_0401/A2/2664:2670UNCG variation
geometric
HL_2CZJ_007
NA
HL_8QYX_0411/A2/2704:2712No text annotation
HL_8QYX_0421/A2/2738:2742No text annotation
homologous
HL_8C3A_040
NA
HL_8QYX_0431/A2/2792:2799No text annotation
homologous
HL_8P9A_152
HL_28592.1
HL_8QYX_0441/A2/2810:2816GNRA
homologous
HL_8P9A_153
HL_34789.1
HL_8QYX_0451/A2/2872:2877UNCG
homologous
HL_8P9A_154
HL_61337.1
HL_8QYX_0461/A2/3614:3618No text annotation
homologous
HL_8C3A_045
NA
HL_8QYX_0471/A2/3639:3649No text annotation
homologous
HL_8P9A_157
HL_87681.1
HL_8QYX_0481/A2/3668:3674No text annotation
geometric
HL_8C3A_054
NA
HL_8QYX_0491/A2/3724:3729GNRA
homologous
HL_8P9A_159
HL_34789.1
HL_8QYX_0501/A2/3755:3769No text annotation
HL_8QYX_0511/A2/3796:3804No text annotation
homologous
HL_8C3A_050
NA
HL_8QYX_0521/A2/3873:3882No text annotation
homologous
HL_8P9A_162
HL_78372.1
HL_8QYX_0541/A2/4193:4201No text annotation
homologous
HL_8P9A_165
HL_11974.1
HL_8QYX_0551/A2/4210:4222No text annotation
homologous
HL_8P9A_166
HL_02042.1
HL_8QYX_0561/A2/4250:4258No text annotation
homologous
HL_8P9A_167
HL_02452.1
HL_8QYX_0571/A2/4270:4277Pseudoknot geometry
homologous
HL_8P9A_168
HL_52651.1
HL_8QYX_0581/A2/4301:4309No text annotation
homologous
HL_8C3A_059
NA
HL_8QYX_0591/A2/4321:4326GNRA
homologous
HL_8P9A_170
HL_34789.1
HL_8QYX_0601/A2/4352:4362tRNA anticodon loop
geometric
HL_8H1B_001
HL_46665.1
HL_8QYX_0611/A2/4417:4425No text annotation
homologous
HL_8P9A_172
HL_52011.1
HL_8QYX_0621/A2/4474:4481GNRA variation
homologous
HL_8P9A_173
HL_46665.1
HL_8QYX_0631/A2/4497:4503No text annotation
homologous
HL_8P9A_174
HL_48677.1
HL_8QYX_0641/A2/4540:4545GNRA
homologous
HL_8P9A_175
HL_34789.1
HL_8QYX_0651/A2/4603:4608GNRA
homologous
HL_8C3A_066
NA
HL_8QYX_0661/A2/4646:4651Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_8QYX_0671/A2/4688:4702No text annotation
homologous
HL_8C3A_068
NA
HL_8QYX_0681/A2/4907:4914No text annotation
geometric
HL_8G9Z_001
HL_75660.6
HL_8QYX_0691/A2/4975:4983No text annotation
homologous
HL_8C3A_071
NA
HL_8QYX_0701/A2/5021:5028Externally structured
geometric
HL_8C3A_022
NA
HL_8QYX_0711/B2/32:45No text annotation
HL_01182.1
HL_8QYX_0721/B2/36:41No text annotation
HL_59381.1
HL_8QYX_0731/B2/86:91GNRA
HL_34789.1
HL_8QYX_0741/C2/47:56Pseudoknot with intercalation
homologous
HL_8C3A_229
NA
HL_8QYX_0751/C2/68:90No text annotation
homologous
HL_8C3A_075
NA
HL_8QYX_0761/C2/107:112No text annotation
homologous
HL_8P9A_188
HL_13184.1
HL_8QYX_0771/C2/121:129No text annotation

Problematic loops

#loop idProblemSequence
HL_8QYX_004No text annotation
HL_8QYX_017No text annotation
HL_8QYX_028No text annotation
HL_8QYX_035No text annotation
HL_8QYX_037No text annotation
HL_8QYX_053No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8QYX_0011/A2/6:7,
1/C2/149:151		Single bulged C
homologous
IL_8C3A_002
NA
IL_8QYX_0021/A2/12:14,
1/C2/143:144		Single bulged U
homologous
IL_8P9A_232
IL_97561.1
IL_8QYX_0031/A2/16:18,
1/C2/139:141		Isolated non-canonical cWW pair
geometric
IL_1Z7F_006
NA
IL_8QYX_0041/A2/26:27,
1/A2/55:57		No text annotation
homologous
IL_8C3A_004
NA
IL_8QYX_0051/A2/30:37,
1/A2/44:52		No text annotation
homologous
IL_8C3A_005
NA
IL_8QYX_0061/A2/81:88,
1/A2/96:102		8x7 Sarcin-Ricin; G-bulge
geometric
IL_1JBR_001
NA
IL_8QYX_0071/A2/118:121,
1/A2/152:153		Stack outside cWW
geometric
IL_5J7L_268
NA
IL_8QYX_0081/A2/118:122,
1/A2/147:153		No text annotation
IL_8QYX_0091/A2/121:122,
1/A2/147:152		No text annotation
homologous
IL_8C3A_007
NA
IL_8QYX_0101/A2/125:126,
1/A2/142:144		Single bulged C
geometric
IL_5TBW_069
NA
IL_8QYX_0111/A2/162:166,
1/A2/269:273		No text annotation
geometric
IL_8P9A_349
IL_71154.1
IL_8QYX_0121/A2/169:173,
1/A2/263:266		No text annotation
IL_8QYX_0131/A2/175:181,
1/A2/256:261		No text annotation
IL_8QYX_0141/A2/184:189,
1/A2/252:253		Multiple bulged bases
geometric
IL_3IGI_013
IL_44609.1
IL_8QYX_0151/A2/195:196,
1/A2/244:246		Single bulged C
geometric
IL_1DQF_001
NA
IL_8QYX_0161/A2/199:201,
1/A2/214:215		Single bulged U
homologous
IL_8C3A_013
NA
IL_8QYX_0171/A2/339:342,
1/C2/32:33		No text annotation
geometric
IL_8VTW_072
NA
IL_8QYX_0181/A2/348:350,
1/C2/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_8QYX_0191/A2/387:390,
1/A2/401:414		No text annotation
geometric
IL_5TBW_014
NA
IL_8QYX_0201/A2/415:421,
1/C2/13:19		Triple sheared with non-canonical cWW
homologous
IL_8C3A_016
NA
IL_8QYX_0211/A2/443:446,
1/A2/1300:1304		No text annotation
geometric
IL_3MEI_004
NA
IL_8QYX_0221/A2/448:450,
1/A2/1297:1298		Single bulged C
geometric
IL_4C7O_003
NA
IL_8QYX_0231/A2/459:460,
1/A2/695:697		Single bulged C
geometric
IL_3W3S_001
NA
IL_8QYX_0241/A2/462:464,
1/A2/691:693		Isolated non-canonical cWW pair
geometric
IL_5TBW_127
NA
IL_8QYX_0251/A2/465:472,
1/A2/682:690		No text annotation
IL_8QYX_0261/A2/482:485,
1/A2/671:672		Multiple bulged bases
geometric
IL_8C3A_400
NA
IL_8QYX_0271/A2/487:488,
1/A2/665:669		Minor groove platform
geometric
IL_5ML7_009
IL_34520.1
IL_8QYX_0291/A2/494:499,
1/A2/655:659		Partly complementary
geometric
IL_7VYX_004
IL_71154.1
IL_8QYX_0301/A2/500:505,
1/A2/653:654		Multiple bulged bases
geometric
IL_1R3E_002
IL_44609.1
IL_8QYX_0311/A2/508:510,
1/A2/649:650		Single bulged A
geometric
IL_6WPI_001
IL_14190.1
IL_8QYX_0321/A2/709:710,
1/A2/1286:1288		Single bulged G
geometric
IL_4LFB_036
IL_28408.1
IL_8QYX_0331/A2/723:724,
1/A2/942:945		Multiple bulged bases
geometric
IL_7Q80_003
IL_44609.1
IL_8QYX_0341/A2/727:731,
1/A2/938:939		No text annotation
IL_8QYX_0351/A2/732:735,
1/A2/928:937		No text annotation
IL_8QYX_0361/A2/737:742,
1/A2/922:926		No text annotation
IL_8QYX_0371/A2/745:752,
1/A2/911:919		No text annotation
geometric
IL_8C3A_022
NA
IL_8QYX_0381/A2/1073:1074,
1/A2/1237:1239		Single bulged A
geometric
IL_4R4V_003
IL_14190.1
IL_8QYX_0391/A2/1082:1084,
1/A2/1213:1217		No text annotation
IL_8QYX_0401/A2/1086:1087,
1/A2/1209:1211		Single bulged C
geometric
IL_3W3S_001
NA
IL_8QYX_0421/A2/1244:1245,
1/A2/1265:1267		Single bulged G
geometric
IL_8C3A_048
NA
IL_8QYX_0431/A2/1357:1360,
1/A2/1379:1382		No text annotation
IL_8QYX_0441/A2/1357:1361,
1/A2/1376:1382		No text annotation
IL_8QYX_0451/A2/1360:1361,
1/A2/1376:1379		Multiple bulged bases
geometric
IL_1R3E_002
IL_44609.1
IL_8QYX_0461/A2/1425:1429,
1/A2/1455:1460		Triple sheared related
geometric
IL_4V9F_018
IL_67427.1
IL_8QYX_0471/A2/1431:1434,
1/A2/1450:1453		Double sheared
geometric
IL_6WZR_001
NA
IL_8QYX_0481/A2/1467:1468,
1/A2/1496:1498		Single bulged A
homologous
IL_8P9A_252
IL_14190.1
IL_8QYX_0491/A2/1474:1476,
1/A2/1489:1490		Single stack bend
geometric
IL_7A0S_005
IL_15011.1
IL_8QYX_0501/A2/1479:1480,
1/A2/1484:1486		Single bulged C
geometric
IL_5J7L_311
NA
IL_8QYX_0511/A2/1520:1522,
1/A2/1655:1657		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_8QYX_0521/A2/1522:1526,
1/A2/1648:1655		No text annotation
homologous
IL_8P9A_256
IL_73855.1
IL_8QYX_0531/A2/1545:1546,
1/A2/1612:1614		Single bulged A
homologous
IL_8C3A_031
NA
IL_8QYX_0541/A2/1550:1551,
1/A2/1576:1578		Single bulged G
homologous
IL_8C3A_032
NA
IL_8QYX_0551/A2/1551:1555,
1/A2/1572:1576		Triple sheared
homologous
IL_8C3A_033
NA
IL_8QYX_0561/A2/1586:1589,
1/A2/1605:1607		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_8QYX_0571/A2/1590:1592,
1/A2/1603:1604		Single bulged U
homologous
IL_8P9A_260
IL_97561.1
IL_8QYX_0581/A2/1624:1626,
1/A2/1636:1640		No text annotation
homologous
IL_8C3A_036
NA
IL_8QYX_0591/A2/1671:1673,
1/A2/1682:1684		Isolated non-canonical cWW pair
homologous
IL_8P9A_262
IL_71625.1
IL_8QYX_0601/A2/1686:1688,
1/A2/1848:1851		No text annotation
IL_8QYX_0611/A2/1723:1725,
1/A2/1838:1839		Single bulged G
homologous
IL_8C3A_040
NA
IL_8QYX_0621/A2/1732:1737,
1/A2/1792:1797		No text annotation
IL_8QYX_0631/A2/1737:1738,
1/A2/1790:1792		Minor groove platform
homologous
IL_8P9A_267
IL_34520.1
IL_8QYX_0641/A2/1739:1744,
1/A2/1786:1789		C-loop with bulged stacked A's
homologous
IL_8C3A_043
NA
IL_8QYX_0651/A2/1746:1749,
1/A2/1781:1784		No text annotation
homologous
IL_8C3A_481
NA
IL_8QYX_0661/A2/1749:1751,
1/A2/1779:1781		Isolated non-canonical cWW pair
homologous
IL_8P9A_270
IL_01003.1
IL_8QYX_0671/A2/1814:1816,
1/A2/1823:1824		Single bulged A
homologous
IL_8P9A_273
IL_14190.1
IL_8QYX_0681/A2/1858:1860,
1/A2/1874:1876		Isolated non-canonical cWW pair
homologous
IL_8P9A_274
IL_01003.1
IL_8QYX_0701/A2/1905:1909,
1/A2/2067:2071		UAA/GAN
homologous
IL_8P9A_276
IL_08938.1
IL_8QYX_0711/A2/1911:1918,
1/A2/2064:2065		SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_8QYX_0721/A2/1918:1920,
1/A2/2063:2064		No text annotation
IL_8QYX_0731/A2/1920:1922,
1/A2/2062:2063		No text annotation
IL_8QYX_0741/A2/1926:1933,
1/A2/2053:2058		No text annotation
homologous
IL_8C3A_054
NA
IL_8QYX_0751/A2/1933:1944,
1/A2/2038:2053		No text annotation
homologous
IL_8P9A_280
IL_34501.1
IL_8QYX_0761/A2/1946:1948,
1/A2/2035:2036		Single bulged U
homologous
IL_8P9A_281
IL_97561.1
IL_8QYX_0771/A2/1957:1969,
1/A2/2019:2026		No text annotation
IL_8QYX_0781/A2/2083:2085,
1/A2/2272:2273		No text annotation
IL_8QYX_0791/A2/2290:2292,
1/A2/2342:2345		No text annotation
homologous
IL_8P9A_285
IL_42997.4
IL_8QYX_0801/A2/2299:2301,
1/A2/2334:2335		Single bulged A
homologous
IL_8C3A_062
NA
IL_8QYX_0811/A2/2302:2309,
1/A2/2329:2333		Kink-turn
homologous
IL_8P9A_287
IL_90775.1
IL_8QYX_0821/A2/2312:2314,
1/A2/2325:2326		Single bulged A
homologous
IL_8P9A_288
IL_14190.1
IL_8QYX_0831/A2/2358:2364,
1/A2/3858:3863		No text annotation
homologous
IL_8C3A_065
NA
IL_8QYX_0841/A2/2406:2409,
1/A2/2783:2784		Major groove platform; stack outside cWW
geometric
IL_4V9F_050
IL_74641.1
IL_8QYX_0851/A2/2415:2419,
1/A2/2427:2429		C-loop
homologous
IL_8C3A_482
NA
IL_8QYX_0861/A2/2446:2450,
1/A2/2509:2514		UAA/GAN
homologous
IL_8C3A_067
NA
IL_8QYX_0871/A2/2477:2479,
1/A2/2499:2500		Minor groove platform
geometric
IL_8C3A_042
NA
IL_8QYX_0881/A2/2542:2547,
1/A2/2772:2774		No text annotation
geometric
IL_8VTW_040
NA
IL_8QYX_0891/A2/2549:2550,
1/A2/2768:2770		No text annotation
homologous
IL_8C3A_483
NA
IL_8QYX_0901/A2/2589:2593,
1/A2/2752:2756		Triple sheared
homologous
IL_8P9A_295
IL_15190.1
IL_8QYX_0911/A2/2613:2614,
1/A2/2724:2726		Single bulged C
homologous
IL_8P9A_297
IL_05642.1
IL_8QYX_0921/A2/2614:2615,
1/A2/2722:2724		Single stack bend
homologous
IL_8C3A_076
NA
IL_8QYX_0931/A2/2646:2648,
1/A2/2685:2688		Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_87316.1
IL_8QYX_0941/A2/2651:2653,
1/A2/2681:2682		Single bulged G
geometric
IL_7D7W_002
IL_28408.1
IL_8QYX_0951/A2/2656:2662,
1/A2/2672:2678		No text annotation
homologous
IL_8P9A_301
IL_93476.1
IL_8QYX_0961/A2/2832:2838,
1/A2/3850:3853		No text annotation
homologous
IL_8P9A_302
IL_89862.1
IL_8QYX_0971/A2/2844:2846,
1/A2/3842:3844		No text annotation
homologous
IL_8P9A_303
IL_10432.1
IL_8QYX_0981/A2/2847:2850,
1/A2/3840:3841		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_8QYX_0991/A2/2847:2855,
1/A2/3837:3841		No text annotation
geometric
IL_8C3A_484
NA
IL_8QYX_1001/A2/2850:2855,
1/A2/3837:3840		No text annotation
homologous
IL_8P9A_306
IL_28217.1
IL_8QYX_1011/A2/2867:2872,
1/A2/2877:2883		No text annotation
homologous
IL_8C3A_084
NA
IL_8QYX_1021/A2/2889:2891,
1/A2/3610:3612		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_8QYX_1031/A2/2896:2897,
1/A2/3602:3605		No text annotation
homologous
IL_8C3A_086
NA
IL_8QYX_1061/A2/3632:3633,
1/A2/3827:3829		Single bulged A
homologous
IL_8P9A_310
IL_14190.1
IL_8QYX_1071/A2/3660:3665,
1/A2/3677:3684		No text annotation
homologous
IL_8P9A_311
IL_14684.1
IL_8QYX_1081/A2/3700:3703,
1/A2/3749:3750		Minor groove platform, major groove intercalation
homologous
IL_8P9A_312
IL_73108.1
IL_8QYX_1091/A2/3704:3705,
1/A2/3745:3748		Major groove intercalation
homologous
IL_8P9A_313
IL_71421.1
IL_8QYX_1101/A2/3708:3714,
1/A2/3739:3742		No text annotation
IL_8QYX_1111/A2/3715:3721,
1/A2/3732:3738		No text annotation
homologous
IL_8C3A_093
NA
IL_8QYX_1121/A2/3780:3781,
1/A2/3811:3814		No text annotation
geometric
IL_8C3A_094
NA
IL_8QYX_1131/A2/3781:3792,
1/A2/3808:3811		No text annotation
homologous
IL_8C3A_095
NA
IL_8QYX_1141/A2/3895:3898,
1/A2/4563:4565		No text annotation
homologous
IL_8P9A_319
IL_75527.1
IL_8QYX_1151/A2/3900:3902,
1/A2/4558:4561		No text annotation
homologous
IL_8C3A_097
NA
IL_8QYX_1161/A2/3913:3915,
1/A2/4388:4389		Single bulged U
homologous
IL_8C3A_098
NA
IL_8QYX_1171/A2/3916:3917,
1/A2/4384:4387		Minor groove platform
homologous
IL_8P9A_322
IL_34520.1
IL_8QYX_1181/A2/3927:3929,
1/A2/4181:4184		No text annotation
homologous
IL_8C3A_100
NA
IL_8QYX_1191/A2/3942:3944,
1/A2/4068:4071		Isolated cWH basepair
geometric
IL_3D0M_001
NA
IL_8QYX_1211/A2/4082:4088,
1/A2/4161:4164		No text annotation
homologous
IL_8C3A_106
NA
IL_8QYX_1221/A2/4091:4129,
1/A2/4155:4158		No text annotation
IL_8QYX_1231/A2/4191:4192,
1/A2/4202:4204		Single bulged A
homologous
IL_8P9A_325
IL_14190.1
IL_8QYX_1241/A2/4243:4245,
1/A2/4263:4267		No text annotation
homologous
IL_8P9A_326
IL_14250.1
IL_8QYX_1251/A2/4291:4293,
1/A2/4317:4318		Single bulged A
geometric
IL_7MKY_001
IL_14190.1
IL_8QYX_1261/A2/4295:4298,
1/A2/4312:4315		Tandem non-canonical cWW pairs
homologous
IL_8P9A_327
IL_15225.1
IL_8QYX_1271/A2/4347:4350,
1/A2/4364:4365		Minor groove platform
geometric
IL_8C3A_422
NA
IL_8QYX_1281/A2/4400:4401,
1/A2/4442:4444		Major groove platform
homologous
IL_8P9A_329
IL_48076.7
IL_8QYX_1291/A2/4401:4403,
1/A2/4440:4442		Isolated non-canonical cWW pair
homologous
IL_8P9A_330
IL_01003.1
IL_8QYX_1301/A2/4403:4405,
1/A2/4439:4440		No text annotation
homologous
IL_8P9A_331
IL_46637.1
IL_8QYX_1311/A2/4405:4407,
1/A2/4435:4439		No text annotation
homologous
IL_8P9A_332
IL_36931.1
IL_8QYX_1321/A2/4412:4416,
1/A2/4426:4430		No text annotation
homologous
IL_8C3A_114
NA
IL_8QYX_1331/A2/4453:4454,
1/A2/4526:4528		Major groove platform
homologous
IL_8C3A_115
NA
IL_8QYX_1341/A2/4456:4458,
1/A2/4520:4524		No text annotation
homologous
IL_8C3A_116
NA
IL_8QYX_1351/A2/4458:4459,
1/A2/4517:4520		No text annotation
homologous
IL_8C3A_117
NA
IL_8QYX_1361/A2/4466:4468,
1/A2/4489:4491		Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_8QYX_1371/A2/4466:4470,
1/A2/4485:4491		No text annotation
IL_8QYX_1381/A2/4468:4470,
1/A2/4485:4489		No text annotation
geometric
IL_3DD2_004
NA
IL_8QYX_1391/A2/4495:4497,
1/A2/4503:4505		Isolated non-canonical cWW pair
homologous
IL_8P9A_340
IL_01003.1
IL_8QYX_1401/A2/4537:4538,
1/A2/4547:4549		Single bulged A
homologous
IL_8P9A_341
IL_14190.1
IL_8QYX_1411/A2/4580:4582,
1/A2/4721:4723		Isolated cWH basepair
geometric
IL_4E5C_001
NA
IL_8QYX_1421/A2/4582:4585,
1/A2/4717:4721		Double sheared; A in syn
geometric
IL_8T29_001
IL_58355.1
IL_8QYX_1431/A2/4590:4592,
1/A2/4618:4620		Isolated non-canonical cWW pair
homologous
IL_8P9A_343
IL_71625.1
IL_8QYX_1441/A2/4596:4603,
1/A2/4608:4614		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_8QYX_1451/A2/4624:4629,
1/A2/4669:4673		No text annotation
IL_8QYX_1461/A2/4632:4637,
1/A2/4662:4666		UAA/GAN related
homologous
IL_8C3A_127
NA
IL_8QYX_1471/A2/4638:4640,
1/A2/4659:4661		Isolated cWH basepair
geometric
IL_3R1C_018
IL_10892.1
IL_8QYX_1481/A2/4641:4642,
1/A2/4655:4658		No text annotation
homologous
IL_8P9A_347
NA
IL_8QYX_1491/A2/4680:4685,
1/A2/4705:4710		UAA/GAN with extra cWW
geometric
IL_5J7L_350
NA
IL_8QYX_1501/A2/4740:4742,
1/A2/4958:4959		No text annotation
IL_8QYX_1511/A2/4743:4746,
1/A2/4954:4957		Tandem non-canonical cWW pairs
geometric
IL_5LQT_002
NA
IL_8QYX_1521/A2/4749:4751,
1/A2/4948:4951		No text annotation
IL_8QYX_1531/A2/4756:4765,
1/A2/4869:4877		No text annotation
IL_8QYX_1541/A2/4769:4771,
1/A2/4863:4865		Isolated non-canonical cWW pair
geometric
IL_8VTW_082
NA
IL_8QYX_1551/A2/4885:4889,
1/A2/4930:4934		Triple non-canonical cWW pairs
geometric
IL_8S95_002
NA
IL_8QYX_1561/A2/4891:4896,
1/A2/4924:4928		No text annotation
IL_8QYX_1571/A2/4899:4901,
1/A2/4920:4921		Multiple bulged bases
geometric
IL_8C3A_400
NA
IL_8QYX_1581/A2/4972:4975,
1/A2/4983:4986		Tandem non-canonical cWW pairs
homologous
IL_8C3A_135
NA
IL_8QYX_1591/A2/4992:4994,
1/A2/5057:5059		Isolated non-canonical cWW pair
geometric
IL_5UNE_007
NA
IL_8QYX_1601/A2/4996:4997,
1/A2/5053:5055		No text annotation
IL_8QYX_1611/A2/5000:5002,
1/A2/5045:5050		No text annotation
homologous
IL_8P9A_359
IL_00086.1
IL_8QYX_1621/A2/5003:5009,
1/A2/5039:5044		No text annotation
IL_8QYX_1631/A2/5012:5014,
1/A2/5035:5036		Single bulged U
homologous
IL_8C3A_140
NA
IL_8QYX_1641/A2/5014:5017,
1/A2/5032:5035		Double sheared; A in syn
homologous
IL_8P9A_362
IL_58355.1
IL_8QYX_1651/B2/15:16,
1/B2/62:64		Single bulged A
IL_05642.1
IL_8QYX_1661/B2/21:27,
1/B2/52:57		Minor groove platform related
IL_41504.1
IL_8QYX_1671/B2/28:29,
1/B2/48:51		Major groove minor groove platform; mini C-loop
IL_73108.1
IL_8QYX_1681/B2/32:36,
1/B2/41:45		Symmetric double minor groove platform
IL_58103.12
IL_8QYX_1691/B2/71:78,
1/B2/98:104		8x7 Sarcin-Ricin; G-bulge
IL_62167.1
IL_8QYX_1701/B2/79:81,
1/B2/95:97		Isolated non-canonical cWW pair
IL_71625.1
IL_8QYX_1711/B2/82:85,
1/B2/92:94		Isolated non-canonical cWW pair
IL_01003.1
IL_8QYX_1721/C2/64:66,
1/C2/92:95		Isolated non-canonical cWW with bulges
homologous
IL_8P9A_371
IL_68118.1

Problematic loops

#loop idProblemSequence
IL_8QYX_028No text annotation
IL_8QYX_041Single bulged G
IL_8QYX_069No text annotation
IL_8QYX_104No text annotation
IL_8QYX_173No text annotation
IL_8QYX_105No text annotation
IL_8QYX_120No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8QYX_0011/A2/112:116,
1/A2/155:160,
1/A2/275:278		No text annotation
J3_8QYX_0021/A2/196:199,
1/A2/215:228,
1/A2/240:244		No text annotation
J3_8QYX_0031/A2/351:367,
1/A2/374:379,
1/C2/21:24		No text annotation
homologous
J3_8P9A_045
J3_07616.1
J3_8QYX_0041/A2/380:387,
1/A2/414:415,
1/C2/19:20		No text annotation
geometric
J3_5TBW_002
NA
J3_8QYX_0051/A2/380:390,
1/A2/401:415,
1/C2/19:20		No text annotation
homologous
J3_8C3A_049
NA
J3_8QYX_0061/A2/451:459,
1/A2/697:705,
1/A2/1292:1296		No text annotation
J3_8QYX_0071/A2/712:713,
1/A2/955:976,
1/A2/1278:1284		No text annotation
J3_8QYX_0081/A2/1531:1537,
1/A2/1622:1624,
1/A2/1640:1643		No text annotation
homologous
J3_8P9A_049
J3_46658.1
J3_8QYX_0091/A2/1546:1548,
1/A2/1580:1584,
1/A2/1609:1612		No text annotation
homologous
J3_8C3A_004
NA
J3_8QYX_0101/A2/1726:1727,
1/A2/1802:1806,
1/A2/1832:1837		No text annotation
homologous
J3_8P9A_051
J3_84137.1
J3_8QYX_0111/A2/2393:2399,
1/A2/2805:2807,
1/A2/2819:2822		No text annotation
homologous
J3_8P9A_053
J3_05025.1
J3_8QYX_0121/A2/2402:2405,
1/A2/2785:2791,
1/A2/2800:2802		No text annotation
homologous
J3_8C3A_007
NA
J3_8QYX_0131/A2/2440:2445,
1/A2/2515:2519,
1/A2/2536:2537		No text annotation
homologous
J3_8P9A_055
J3_94309.1
J3_8QYX_0141/A2/2451:2456,
1/A2/2465:2476,
1/A2/2501:2508		No text annotation
J3_8QYX_0151/A2/2551:2555,
1/A2/2572:2575,
1/A2/2757:2767		No text annotation
J3_8QYX_0161/A2/2575:2576,
1/A2/2585:2589,
1/A2/2756:2757		No text annotation
homologous
J3_8C3A_054
NA
J3_8QYX_0171/A2/2598:2602,
1/A2/2737:2738,
1/A2/2742:2747		No text annotation
homologous
J3_8P9A_058
J3_08594.1
J3_8QYX_0181/A2/3937:3939,
1/A2/4074:4078,
1/A2/4168:4173		No text annotation
geometric
J3_8VTW_006
NA
J3_8QYX_0191/A2/4228:4230,
1/A2/4331:4342,
1/A2/4370:4375		No text annotation
homologous
J3_8C3A_056
NA
J3_8QYX_0201/A2/4241:4243,
1/A2/4267:4269,
1/A2/4278:4283		No text annotation
homologous
J3_8P9A_062
J3_05327.1
J3_8QYX_0211/A2/4463:4466,
1/A2/4491:4493,
1/A2/4507:4513		No text annotation
homologous
J3_8P9A_063
J3_44047.1
J3_8QYX_0221/A2/4751:4754,
1/A2/4879:4883,
1/A2/4936:4948		No text annotation
J3_8QYX_0231/A2/4970:4972,
1/A2/4986:4991,
1/A2/5060:5063		No text annotation
J3_8QYX_0241/B2/9:14,
1/B2/65:66,
1/B2/109:110		No text annotation
J3_26985.1
J3_8QYX_0251/C2/44:45,
1/C2/58:64,
1/C2/95:99		No text annotation
homologous
J3_8C3A_060
NA
J4_8QYX_0011/A2/111:112,
1/A2/278:283,
1/A2/304:310,
1/A2/327:330		No text annotation
homologous
J4_8P9A_012
J4_94698.1
J4_8QYX_0021/A2/196:199,
1/A2/215:222,
1/A2/226:228,
1/A2/240:244		No text annotation
J4_8QYX_0031/A2/981:983,
1/A2/1070:1072,
1/A2/1240:1243,
1/A2/1268:1273		No text annotation
J4_8QYX_0041/A2/2365:2371,
1/A2/2389:2391,
1/A2/2824:2829,
1/A2/3856:3857		No text annotation
J4_8QYX_0051/A2/2406:2410,
1/A2/2434:2439,
1/A2/2538:2539,
1/A2/2777:2784		No text annotation
J4_8QYX_0061/A2/2409:2410,
1/A2/2434:2439,
1/A2/2538:2539,
1/A2/2777:2783		No text annotation
J4_8QYX_0071/A2/2451:2456,
1/A2/2465:2469,
1/A2/2471:2476,
1/A2/2501:2508		No text annotation
J4_8QYX_0081/A2/2618:2619,
1/A2/2637:2642,
1/A2/2692:2698,
1/A2/2718:2719		No text annotation
J4_8QYX_0091/A2/3634:3638,
1/A2/3650:3654,
1/A2/3690:3694,
1/A2/3821:3826		No text annotation
homologous
J4_8P9A_017
J4_78485.1
J4_8QYX_0101/A2/3696:3698,
1/A2/3752:3753,
1/A2/3771:3780,
1/A2/3814:3819		No text annotation
homologous
J4_8P9A_018
J4_42306.1
J4_8QYX_0111/A2/4231:4235,
1/A2/4289:4291,
1/A2/4318:4319,
1/A2/4328:4330		No text annotation
J4_8QYX_0121/A2/4231:4235,
1/A2/4289:4293,
1/A2/4317:4319,
1/A2/4328:4330		No text annotation
homologous
J4_8C3A_008
NA
J4_8QYX_0131/A2/4587:4590,
1/A2/4620:4621,
1/A2/4676:4678,
1/A2/4712:4715		No text annotation
J5_8QYX_0011/A2/19:21,
1/C2/35:42,
1/C2/101:106,
1/C2/113:114,
1/C2/136:138		No text annotation
homologous
J5_8P9A_010
J5_27223.1
J5_8QYX_0021/A2/1335:1340,
1/A2/1516:1519,
1/A2/1658:1661,
1/A2/2288:2290,
1/A2/2345:2351		No text annotation
homologous
J5_8P9A_011
J5_08384.1
J5_8QYX_0031/A2/2855:2863,
1/A2/2887:2888,
1/A2/3613:3614,
1/A2/3618:3626,
1/A2/3835:3837		No text annotation
homologous
J5_8C3A_004
NA
J5_8QYX_0041/A2/3903:3910,
1/A2/4392:4400,
1/A2/4444:4453,
1/A2/4528:4534,
1/A2/4552:4557		No text annotation
J5_8QYX_0051/A2/3920:3923,
1/A2/4188:4191,
1/A2/4204:4205,
1/A2/4227:4228,
1/A2/4375:4381		No text annotation
homologous
J5_8P9A_015
J5_96125.1
J6_8QYX_0011/A2/21:26,
1/A2/57:67,
1/A2/74:78,
1/A2/105:109,
1/A2/332:339,
1/C2/33:35		No text annotation
J6_8QYX_0021/A2/1352:1355,
1/A2/1384:1388,
1/A2/1395:1399,
1/A2/1418:1421,
1/A2/1464:1466,
1/A2/1499:1504		No text annotation
J6_8QYX_0031/A2/3920:3923,
1/A2/4188:4191,
1/A2/4204:4205,
1/A2/4227:4230,
1/A2/4331:4342,
1/A2/4370:4381		No text annotation
J7_8QYX_0011/A2/1666:1671,
1/A2/1684:1685,
1/A2/1852:1855,
1/A2/1879:1884,
1/A2/1895:1899,
1/A2/2077:2078,
1/A2/2278:2283		No text annotation

Problematic loops

No problematic loops


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