HL_8QYX_012

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GCGGACUGUCCCCAGUGCGC

Length

20 nucleotides

Bulged bases

8QYX|1|A2|G|1178, 8QYX|1|A2|U|1179, 8QYX|1|A2|C|1181, 8QYX|1|A2|C|1182, 8QYX|1|A2|C|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QYX|1|A2|G|1171
8QYX|1|A2|C|1172
8QYX|1|A2|G|1173
8QYX|1|A2|G|1174
8QYX|1|A2|A|1175
8QYX|1|A2|C|1176
8QYX|1|A2|U|1177
8QYX|1|A2|G|1178
8QYX|1|A2|U|1179
8QYX|1|A2|C|1180
8QYX|1|A2|C|1181
8QYX|1|A2|C|1182
8QYX|1|A2|C|1183
8QYX|1|A2|A|1184
8QYX|1|A2|G|1185
8QYX|1|A2|U|1186
8QYX|1|A2|G|1187
8QYX|1|A2|C|1188
8QYX|1|A2|G|1189
8QYX|1|A2|C|1190

Current chains

Chain A2

28S rRNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain D1

Ribosomal protein uL16-like

Chain G2

60S ribosomal protein L5