HL_8QYX_016

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_016 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.0561

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8QYX|1|A2|U|1389
8QYX|1|A2|G|1390
8QYX|1|A2|A|1391
8QYX|1|A2|A|1392
8QYX|1|A2|G|1393
8QYX|1|A2|G|1394

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F1

60S ribosomal protein L13

Chain K1

60S ribosomal protein L18

Chain U1

Large ribosomal subunit protein uL15

Chain c1

60S ribosomal protein L36