HL_8QYX_019

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CCGCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_019 not in the Motif Atlas

Geometric match to HL_5SWD_005

Geometric discrepancy: 0.1278

The information below is about HL_5SWD_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8QYX|1|A2|C|1480
8QYX|1|A2|C|1481
8QYX|1|A2|G|1482
8QYX|1|A2|C|1483
8QYX|1|A2|G|1484

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F1

60S ribosomal protein L13

Chain c1

60S ribosomal protein L36