HL_8QYX_020

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

8QYX|1|A2|A|1563

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_020 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2556

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8QYX|1|A2|G|1561
8QYX|1|A2|G|1562
8QYX|1|A2|A|1563
8QYX|1|A2|A|1564
8QYX|1|A2|A|1565
8QYX|1|A2|C|1566

Current chains

Chain A2

28S rRNA

Nearby chains

Chain j1

60S ribosomal protein L37a