HL_8QYX_024

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GUCUUGGGGCCGAAACGAUCUCAAC

Length

25 nucleotides

Bulged bases

8QYX|1|A2|U|1757, 8QYX|1|A2|C|1762, 8QYX|1|A2|A|1765, 8QYX|1|A2|A|1766, 8QYX|1|A2|A|1767, 8QYX|1|A2|C|1768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QYX|1|A2|G|1753
8QYX|1|A2|U|1754
8QYX|1|A2|C|1755
8QYX|1|A2|U|1756
8QYX|1|A2|U|1757
8QYX|1|A2|G|1758
8QYX|1|A2|G|1759
8QYX|1|A2|G|1760
8QYX|1|A2|G|1761
8QYX|1|A2|C|1762
8QYX|1|A2|C|1763
8QYX|1|A2|G|1764
8QYX|1|A2|A|1765
8QYX|1|A2|A|1766
8QYX|1|A2|A|1767
8QYX|1|A2|C|1768
8QYX|1|A2|G|1769
8QYX|1|A2|A|1770
8QYX|1|A2|U|1771
8QYX|1|A2|C|1772
8QYX|1|A2|U|1773
8QYX|1|A2|C|1774
8QYX|1|A2|A|1775
8QYX|1|A2|A|1776
8QYX|1|A2|C|1777

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D1

Ribosomal protein uL16-like

Chain E1

60S ribosomal protein L11

Chain G2

60S ribosomal protein L5