HL_8QYX_027

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_027 not in the Motif Atlas

Homologous match to HL_8P9A_138

Geometric discrepancy: 0.0761

The information below is about HL_8P9A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8QYX|1|A2|G|1886
8QYX|1|A2|G|1887
8QYX|1|A2|A|1888
8QYX|1|A2|U|1889
8QYX|1|A2|G|1890
8QYX|1|A2|A|1891
8QYX|1|A2|A|1892
8QYX|1|A2|C|1893

Current chains

Chain A2

28S rRNA

Nearby chains

Chain A1

Large ribosomal subunit protein uL30

Chain B2

5S ribosomal RNA; 5S rRNA

Chain Y1

60S ribosomal protein L32

Chain Z1

60S ribosomal protein L35a