HL_8QYX_030

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CGCGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_030 not in the Motif Atlas

Homologous match to HL_8P9A_142

Geometric discrepancy: 0.0677

The information below is about HL_8P9A_142

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8QYX|1|A2|C|2317
8QYX|1|A2|G|2318
8QYX|1|A2|C|2319
8QYX|1|A2|G|2320
8QYX|1|A2|G|2321
8QYX|1|A2|G|2322

Current chains

Chain A2

28S rRNA

Nearby chains

Chain Y1

60S ribosomal protein L32

Chain k1

60S ribosomal protein L28