HL_8QYX_033

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_033 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.171

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8QYX|1|A2|C|2458
8QYX|1|A2|G|2459
8QYX|1|A2|A|2460
8QYX|1|A2|G|2461
8QYX|1|A2|C|2462
8QYX|1|A2|G|2463

Current chains

Chain A2

28S rRNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain H1

60S ribosomal protein L15

Chain d1

60S ribosomal protein L37