HL_8QYX_042

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CCUUG

Length

5 nucleotides

Bulged bases

8QYX|1|A2|C|2739, 8QYX|1|A2|U|2740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_042 not in the Motif Atlas

Homologous match to HL_8C3A_040

Geometric discrepancy: 0.0831

The information below is about HL_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

8QYX|1|A2|C|2738
8QYX|1|A2|C|2739
8QYX|1|A2|U|2740
8QYX|1|A2|U|2741
8QYX|1|A2|G|2742

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D2

Large ribosomal subunit protein uL2

Chain j1

60S ribosomal protein L37a