HL_8QYX_044

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

UGAAC(A2M)G

Length

7 nucleotides

Bulged bases

8QYX|1|A2|C|2814

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_044 not in the Motif Atlas

Homologous match to HL_8P9A_153

Geometric discrepancy: 0.1857

The information below is about HL_8P9A_153

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8QYX|1|A2|U|2810
8QYX|1|A2|G|2811
8QYX|1|A2|A|2812
8QYX|1|A2|A|2813
8QYX|1|A2|C|2814
8QYX|1|A2|A2M|2815
8QYX|1|A2|G|2816

Current chains

Chain A2

28S rRNA

Nearby chains

Chain L1

60S ribosomal protein L19