HL_8QYX_049

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_049 not in the Motif Atlas

Homologous match to HL_8P9A_159

Geometric discrepancy: 0.0637

The information below is about HL_8P9A_159

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8QYX|1|A2|A|3724
8QYX|1|A2|G|3725
8QYX|1|A2|A|3726
8QYX|1|A2|A|3727
8QYX|1|A2|A|3728
8QYX|1|A2|U|3729

Current chains

Chain A2

28S rRNA

Nearby chains

Chain c1

60S ribosomal protein L36

Chain i1

60S ribosomal protein L36a