HL_8QYX_052

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8QYX|1|A2|A|3876, 8QYX|1|A2|A|3877, 8QYX|1|A2|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_052 not in the Motif Atlas

Homologous match to HL_8P9A_162

Geometric discrepancy: 0.0562

The information below is about HL_8P9A_162

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

8QYX|1|A2|G|3873
8QYX|1|A2|G|3874
8QYX|1|A2|G|3875
8QYX|1|A2|A|3876
8QYX|1|A2|A|3877
8QYX|1|A2|C|3878
8QYX|1|A2|G|3879
8QYX|1|A2|G|3880
8QYX|1|A2|G|3881
8QYX|1|A2|C|3882

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

Large ribosomal subunit protein uL3

Chain I1

60S ribosomal protein L13a

Chain Y1

60S ribosomal protein L32