HL_8QYX_054

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

8QYX|1|A2|G|4195

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_054 not in the Motif Atlas

Homologous match to HL_8P9A_165

Geometric discrepancy: 0.0892

The information below is about HL_8P9A_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

8QYX|1|A2|C|4193
8QYX|1|A2|U|4194
8QYX|1|A2|G|4195
8QYX|1|A2|OMG|4196
8QYX|1|A2|G|4197
8QYX|1|A2|G|4198
8QYX|1|A2|C|4199
8QYX|1|A2|G|4200
8QYX|1|A2|G|4201

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D1

Ribosomal protein uL16-like

Chain V1

60S ribosomal protein L29