3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
CUG(OMG)GGCGG
Length
9 nucleotides
Bulged bases
8QYX|1|A2|G|4195
QA status
Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8QYX_054 not in the Motif Atlas
Homologous match to HL_8P9A_165
Geometric discrepancy: 0.0892
The information below is about HL_8P9A_165
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_11974.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
16

Unit IDs

8QYX|1|A2|C|4193
8QYX|1|A2|U|4194
8QYX|1|A2|G|4195
8QYX|1|A2|OMG|4196
8QYX|1|A2|G|4197
8QYX|1|A2|G|4198
8QYX|1|A2|C|4199
8QYX|1|A2|G|4200
8QYX|1|A2|G|4201

Current chains

Chain A2
28S rRNA

Nearby chains

Chain D1
Ribosomal protein uL16-like
Chain V1
60S ribosomal protein L29

Coloring options:


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