HL_8QYX_056

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_056 not in the Motif Atlas

Homologous match to HL_8P9A_167

Geometric discrepancy: 0.1176

The information below is about HL_8P9A_167

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8QYX|1|A2|G|4250
8QYX|1|A2|A|4251
8QYX|1|A2|C|4252
8QYX|1|A2|A|4253
8QYX|1|A2|G|4254
8QYX|1|A2|A|4255
8QYX|1|A2|A|4256
8QYX|1|A2|A|4257
8QYX|1|A2|C|4258

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E1

60S ribosomal protein L11