HL_8QYX_057
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- CAGAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QYX_057 not in the Motif Atlas
- Homologous match to HL_8P9A_168
- Geometric discrepancy: 0.0869
- The information below is about HL_8P9A_168
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 27
Unit IDs
8QYX|1|A2|C|4270
8QYX|1|A2|A|4271
8QYX|1|A2|G|4272
8QYX|1|A2|A|4273
8QYX|1|A2|A|4274
8QYX|1|A2|G|4275
8QYX|1|A2|G|4276
8QYX|1|A2|G|4277
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain D1
- Ribosomal protein uL16-like
- Chain G2
- 60S ribosomal protein L5
- Chain N1
- 60S ribosomal protein L21
- Chain i1
- 60S ribosomal protein L36a
Coloring options: