HL_8QYX_059

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_059 not in the Motif Atlas

Homologous match to HL_8P9A_170

Geometric discrepancy: 0.0622

The information below is about HL_8P9A_170

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8QYX|1|A2|U|4321
8QYX|1|A2|G|4322
8QYX|1|A2|A|4323
8QYX|1|A2|A|4324
8QYX|1|A2|A|4325
8QYX|1|A2|G|4326

Current chains

Chain A2

28S rRNA

Nearby chains

Chain G2

60S ribosomal protein L5

Chain N1

60S ribosomal protein L21

Chain i1

60S ribosomal protein L36a