HL_8QYX_060
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- U(PSU)UGGGUUU(PSU)A
- Length
- 11 nucleotides
- Bulged bases
- 8QYX|1|A2|U|4354
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QYX_060 not in the Motif Atlas
- Geometric match to HL_8H1B_001
- Geometric discrepancy: 0.2675
- The information below is about HL_8H1B_001
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_86621.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8QYX|1|A2|U|4352
8QYX|1|A2|PSU|4353
8QYX|1|A2|U|4354
8QYX|1|A2|G|4355
8QYX|1|A2|G|4356
8QYX|1|A2|G|4357
8QYX|1|A2|U|4358
8QYX|1|A2|U|4359
8QYX|1|A2|U|4360
8QYX|1|A2|PSU|4361
8QYX|1|A2|A|4362
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain F1
- 60S ribosomal protein L13
- Chain U1
- Large ribosomal subunit protein uL15
- Chain c1
- 60S ribosomal protein L36
- Chain i1
- 60S ribosomal protein L36a
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