3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
CGAGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8QYX_065 not in the Motif Atlas
Homologous match to HL_8C3A_066
Geometric discrepancy: 0.0681
The information below is about HL_8C3A_066
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

8QYX|1|A2|C|4603
8QYX|1|A2|G|4604
8QYX|1|A2|A|4605
8QYX|1|A2|G|4606
8QYX|1|A2|A|4607
8QYX|1|A2|G|4608

Current chains

Chain A2
28S rRNA

Nearby chains

Chain C1
60S ribosomal protein L9
Chain g1
Large ribosomal subunit protein eL40

Coloring options:


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