HL_8QYX_067

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8QYX|1|A2|G|4694, 8QYX|1|A2|C|4698

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_067 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0592

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8QYX|1|A2|C|4688
8QYX|1|A2|PSU|4689
8QYX|1|A2|G|4690
8QYX|1|A2|A|4691
8QYX|1|A2|A|4692
8QYX|1|A2|C|4693
8QYX|1|A2|G|4694
8QYX|1|A2|C|4695
8QYX|1|A2|C|4696
8QYX|1|A2|U|4697
8QYX|1|A2|C|4698
8QYX|1|A2|U|4699
8QYX|1|A2|A|4700
8QYX|1|A2|A|4701
8QYX|1|A2|G|4702

Current chains

Chain A2

28S rRNA

Nearby chains

Chain C1

60S ribosomal protein L9

Chain I1

60S ribosomal protein L13a

Chain g1

Large ribosomal subunit protein eL40