3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
GGAGAGGC
Length
8 nucleotides
Bulged bases
8QYX|1|A2|G|4910, 8QYX|1|A2|A|4911, 8QYX|1|A2|G|4913
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8QYX_068 not in the Motif Atlas
Geometric match to HL_8G9Z_001
Geometric discrepancy: 0.1011
The information below is about HL_8G9Z_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.6
Basepair signature
cWW-F
Number of instances in this motif group
21

Unit IDs

8QYX|1|A2|G|4907
8QYX|1|A2|G|4908
8QYX|1|A2|A|4909
8QYX|1|A2|G|4910
8QYX|1|A2|A|4911
8QYX|1|A2|G|4912
8QYX|1|A2|G|4913
8QYX|1|A2|C|4914

Current chains

Chain A2
28S rRNA

Nearby chains

Chain E2
Large ribosomal subunit protein uL3
Chain I1
60S ribosomal protein L13a

Coloring options:


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