HL_8QYX_068

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

8QYX|1|A2|G|4910, 8QYX|1|A2|A|4911, 8QYX|1|A2|G|4913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_068 not in the Motif Atlas

Geometric match to HL_8G9Z_001

Geometric discrepancy: 0.1011

The information below is about HL_8G9Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8QYX|1|A2|G|4907
8QYX|1|A2|G|4908
8QYX|1|A2|A|4909
8QYX|1|A2|G|4910
8QYX|1|A2|A|4911
8QYX|1|A2|G|4912
8QYX|1|A2|G|4913
8QYX|1|A2|C|4914

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

Large ribosomal subunit protein uL3

Chain I1

60S ribosomal protein L13a