HL_8QYX_069

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

8QYX|1|A2|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_069 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0813

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8QYX|1|A2|G|4975
8QYX|1|A2|U|4976
8QYX|1|A2|A|4977
8QYX|1|A2|G|4978
8QYX|1|A2|A|4979
8QYX|1|A2|C|4980
8QYX|1|A2|G|4981
8QYX|1|A2|A|4982
8QYX|1|A2|C|4983

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

Large ribosomal subunit protein uL3

Chain J1

60S ribosomal protein L17

Chain X1

60S ribosomal protein L31