HL_8R3V_133

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R3V_133 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.1171

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8R3V|1|A2|C|1314
8R3V|1|A2|U|1315
8R3V|1|A2|G|1316
8R3V|1|A2|C|1317
8R3V|1|A2|A|1318
8R3V|1|A2|A|1319
8R3V|1|A2|C|1320
8R3V|1|A2|U|1321
8R3V|1|A2|C|1322
8R3V|1|A2|G|1323

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain M2

Small ribosomal subunit protein uS13

Chain N2

Small ribosomal subunit protein uS14

Chain S2

Small ribosomal subunit protein uS19