8R3V Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8R3V_001 | 1/71/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_8R3V_002 | 1/72/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
| HL_8R3V_003 | 1/72/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_8R3V_004 | 1/72/123:128 | No text annotation | homologous HL_5J7L_136 HL_82710.2 | |
| HL_8R3V_005 | 1/72/137:142 | UNCG | geometric HL_4LFB_031 HL_34617.5 | |
| HL_8R3V_006 | 1/72/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_8R3V_007 | 1/72/194:201 | No text annotation | homologous HL_4WF9_006 HL_30068.2 | |
| HL_8R3V_008 | 1/72/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_8R3V_009 | 1/72/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
| HL_8R3V_010 | 1/72/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
| HL_8R3V_011 | 1/72/319:323 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_8R3V_012 | 1/72/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_8R3V_013 | 1/72/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_8R3V_014 | 1/72/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
| HL_8R3V_015 | 1/72/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.8 | |
| HL_8R3V_016 | 1/72/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.8 | |
| HL_8R3V_017 | 1/72/544:549 | UNCG variation | geometric HL_2CZJ_007 NA | |
| HL_8R3V_157 | 1/72/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 HL_28252.9 | |
| HL_8R3V_019 | 1/72/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_8R3V_020 | 1/72/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.8 | |
| HL_8R3V_021 | 1/72/641:647 | No text annotation | homologous HL_5J7L_153 HL_13529.1 | |
| HL_8R3V_022 | 1/72/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_8R3V_023 | 1/72/744:753 | No text annotation | homologous HL_5J7L_155 HL_88205.2 | |
| HL_8R3V_024 | 1/72/779:785 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_8R3V_025 | 1/72/826:831 | No text annotation | homologous HL_4WF9_025 HL_55195.3 | |
| HL_8R3V_026 | 1/72/885:891 | No text annotation | homologous HL_5J7L_158 NA | |
| HL_8R3V_150 | 1/72/955:962 | GNRA | homologous HL_5J7L_211 HL_37824.8 | |
| HL_8R3V_028 | 1/72/978:985 | No text annotation | homologous HL_7A0S_027 HL_42998.2 | |
| HL_8R3V_029 | 1/72/1064:1074 | No text annotation | homologous HL_6PRV_001 HL_19210.3 | |
| HL_8R3V_030 | 1/72/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_8R3V_031 | 1/72/1172:1177 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 | |
| HL_8R3V_032 | 1/72/1222:1227 | GNRA | homologous HL_5J7L_164 HL_37824.8 | |
| HL_8R3V_033 | 1/72/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.9 | |
| HL_8R3V_034 | 1/72/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_8R3V_035 | 1/72/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.8 | |
| HL_8R3V_036 | 1/72/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_8R3V_037 | 1/72/1451:1459 | Mini UNCG with extended bulge | geometric HL_5J7L_169 HL_22622.1 | |
| HL_8R3V_038 | 1/72/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_8R3V_039 | 1/72/1533:1538 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_8R3V_040 | 1/72/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_8R3V_041 | 1/72/1612:1619 | No text annotation | homologous HL_5J7L_173 HL_89567.2 | |
| HL_8R3V_042 | 1/72/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.8 | |
| HL_8R3V_043 | 1/72/1691:1696 | UNCG | geometric HL_5J7L_175 HL_34617.5 | |
| HL_8R3V_044 | 1/72/1728:1731 | No text annotation | geometric HL_5J7L_176 HL_32346.4 | |
| HL_8R3V_045 | 1/72/1752:1756 | No text annotation | homologous HL_5J7L_177 HL_80709.3 | |
| HL_8R3V_046 | 1/72/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_8R3V_047 | 1/72/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_8R3V_048 | 1/72/1868:1873 | GNRA variation | homologous HL_5J7L_180 HL_37824.8 | |
| HL_8R3V_049 | 1/72/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_8R3V_050 | 1/72/1949:1957 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
| HL_8R3V_051 | 1/72/2027:2036 | No text annotation | homologous HL_5J7L_183 HL_61996.3 | |
| HL_8R3V_151 | 1/72/2138:2153 | No text annotation | ||
| HL_8R3V_052 | 1/72/2143:2148 | No text annotation | ||
| HL_8R3V_053 | 1/72/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_8R3V_054 | 1/72/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_8R3V_055 | 1/72/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_8R3V_158 | 1/72/2304:2312 | No text annotation | homologous HL_5J7L_219 HL_50860.2 | |
| HL_8R3V_057 | 1/72/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_8R3V_058 | 1/72/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.8 | |
| HL_8R3V_059 | 1/72/2374:2379 | GNRA | homologous HL_5J7L_191 HL_37824.8 | |
| HL_8R3V_060 | 1/72/2404:2413 | No text annotation | homologous HL_5J7L_192 HL_53454.2 | |
| HL_8R3V_061 | 1/72/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
| HL_8R3V_062 | 1/72/2528:2535 | GNRA variation | homologous HL_5J7L_194 HL_31585.4 | |
| HL_8R3V_063 | 1/72/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_8R3V_064 | 1/72/2594:2599 | GNRA | homologous HL_5J7L_196 HL_37824.8 | |
| HL_8R3V_065 | 1/72/2658:2663 | GNRA | geometric HL_5TBW_186 NA | |
| HL_8R3V_066 | 1/72/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_8R3V_067 | 1/72/2745:2759 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
| HL_8R3V_068 | 1/72/2795:2801 | UNCG variation | homologous HL_5J7L_200 HL_08100.1 | |
| HL_8R3V_069 | 1/72/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_8R3V_070 | 1/72/2856:2861 | GNRA | homologous HL_5J7L_202 HL_37824.8 | |
| HL_8R3V_152 | 1/82/34:48 | No text annotation | homologous HL_5J7L_215 HL_97756.2 | |
| HL_8R3V_071 | 1/82/38:44 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_8R3V_072 | 1/82/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 | |
| HL_8R3V_159 | 1/A1/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_8R3V_160 | 1/A1/82:87 | No text annotation | ||
| HL_8R3V_075 | 1/A1/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.8 | |
| HL_8R3V_076 | 1/A1/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.8 | |
| HL_8R3V_077 | 1/A1/203:214 | No text annotation | ||
| HL_8R3V_078 | 1/A1/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_8R3V_079 | 1/A1/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.8 | |
| HL_8R3V_080 | 1/A1/320:333 | No text annotation | homologous HL_6CZR_079 NA | |
| HL_8R3V_081 | 1/A1/342:347 | UNCG | homologous HL_5J7L_009 HL_34617.5 | |
| HL_8R3V_082 | 1/A1/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.8 | |
| HL_8R3V_083 | 1/A1/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_8R3V_084 | 1/A1/462:470 | GNRA wlth extra near cWW | homologous HL_5J7L_012 HL_81538.2 | |
| HL_8R3V_153 | 1/A1/522:527 | GNRA variation | homologous HL_5J7L_205 HL_37824.8 | |
| HL_8R3V_086 | 1/A1/617:623 | GNRA-like with tWH | homologous HL_5J7L_014 HL_10453.3 | |
| HL_8R3V_087 | 1/A1/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_8R3V_088 | 1/A1/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.8 | |
| HL_8R3V_089 | 1/A1/786:796 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_8R3V_090 | 1/A1/840:846 | No text annotation | ||
| HL_8R3V_091 | 1/A1/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.8 | |
| HL_8R3V_092 | 1/A1/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
| HL_8R3V_093 | 1/A1/963:972 | No text annotation | homologous HL_5J7L_021 HL_50779.4 | |
| HL_8R3V_094 | 1/A1/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_8R3V_095 | 1/A1/1028:1033 | No text annotation | geometric HL_7A0S_011 HL_75660.5 | |
| HL_8R3V_096 | 1/A1/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.8 | |
| HL_8R3V_097 | 1/A1/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_8R3V_098 | 1/A1/1134:1140 | No text annotation | homologous HL_4LFB_026 HL_87954.2 | |
| HL_8R3V_099 | 1/A1/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.8 | |
| HL_8R3V_100 | 1/A1/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.8 | |
| HL_8R3V_101 | 1/A1/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
| HL_8R3V_102 | 1/A1/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_8R3V_103 | 1/A1/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_8R3V_104 | 1/A1/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_8R3V_105 | 1/A2/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_8R3V_106 | 1/A2/81:88 | No text annotation | ||
| HL_8R3V_107 | 1/A2/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.8 | |
| HL_8R3V_108 | 1/A2/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.8 | |
| HL_8R3V_109 | 1/A2/203:214 | No text annotation | ||
| HL_8R3V_110 | 1/A2/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_8R3V_111 | 1/A2/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.8 | |
| HL_8R3V_112 | 1/A2/320:333 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_8R3V_113 | 1/A2/342:347 | UNCG | homologous HL_5J7L_009 HL_34617.5 | |
| HL_8R3V_114 | 1/A2/379:384 | GNRA | homologous HL_6CZR_081 NA | |
| HL_8R3V_115 | 1/A2/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_8R3V_116 | 1/A2/462:470 | No text annotation | ||
| HL_8R3V_155 | 1/A2/522:527 | GNRA variation | homologous HL_5J7L_205 HL_37824.8 | |
| HL_8R3V_118 | 1/A2/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_10453.3 | |
| HL_8R3V_119 | 1/A2/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_8R3V_120 | 1/A2/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.8 | |
| HL_8R3V_121 | 1/A2/786:796 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_8R3V_122 | 1/A2/840:846 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_8R3V_123 | 1/A2/862:867 | GNRA | homologous HL_5J7L_019 HL_37824.8 | |
| HL_8R3V_124 | 1/A2/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
| HL_8R3V_125 | 1/A2/963:972 | No text annotation | homologous HL_5J7L_021 HL_50779.4 | |
| HL_8R3V_126 | 1/A2/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_8R3V_127 | 1/A2/1028:1033 | No text annotation | ||
| HL_8R3V_128 | 1/A2/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.8 | |
| HL_8R3V_129 | 1/A2/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_8R3V_130 | 1/A2/1134:1140 | No text annotation | homologous HL_4LFB_026 HL_87954.2 | |
| HL_8R3V_131 | 1/A2/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.8 | |
| HL_8R3V_132 | 1/A2/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.8 | |
| HL_8R3V_133 | 1/A2/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_8R3V_134 | 1/A2/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_8R3V_135 | 1/A2/1449:1454 | UNCG | homologous HL_4LFB_031 HL_34617.5 | |
| HL_8R3V_136 | 1/A2/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_8R3V_137 | 1/W/13:22 | tRNA D-loop | homologous HL_1QF6_001 HL_20811.4 | |
| HL_8R3V_138 | 1/W/31:39 | tRNA anticodon loop | homologous HL_6UFM_002 HL_06059.7 | |
| HL_8R3V_139 | 1/W/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5L4O_003 NA | |
| HL_8R3V_156 | 1/W1/31:39 | tRNA anticodon loop | homologous HL_5J8B_118 NA | |
| HL_8R3V_142 | 1/X2/13:23 | No text annotation | homologous HL_5HR7_004 HL_78347.4 | |
| HL_8R3V_143 | 1/X2/32:40 | tRNA anticodon loop | homologous HL_1U0B_002 HL_06059.7 | |
| HL_8R3V_144 | 1/X2/54:62 | T-loop with 2 stacked bulged bases | homologous HL_1SER_002 NA | |
| HL_8R3V_146 | 1/Y1/30:40 | No text annotation | homologous HL_4WZD_209 NA | |
| HL_8R3V_147 | 1/Y2/13:22 | tRNA D-loop | homologous HL_1QF6_001 HL_20811.4 | |
| HL_8R3V_148 | 1/Y2/31:39 | tRNA anticodon loop | homologous HL_6UFG_007 HL_06059.7 | |
| HL_8R3V_149 | 1/Y2/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_28252.9 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8R3V_018 | No text annotation | ||
| HL_8R3V_027 | No text annotation | ||
| HL_8R3V_056 | No text annotation | ||
| HL_8R3V_073 | No text annotation | ||
| HL_8R3V_074 | No text annotation | ||
| HL_8R3V_085 | No text annotation | ||
| HL_8R3V_154 | No text annotation | ||
| HL_8R3V_117 | No text annotation | ||
| HL_8R3V_140 | tRNA D-loop | ||
| HL_8R3V_141 | No text annotation | ||
| HL_8R3V_145 | tRNA D-loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8R3V_001 | 1/72/24:30, 1/72/510:516 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 IL_04021.2 | |
| IL_8R3V_002 | 1/72/36:37, 1/72/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_8R3V_003 | 1/72/43:44, 1/72/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
| IL_8R3V_004 | 1/72/81:85, 1/72/97:105 | No text annotation | homologous IL_5J7L_248 IL_37015.1 | |
| IL_8R3V_005 | 1/72/183:184, 1/72/212:214 | Single stack bend | homologous IL_5J7L_249 IL_90729.1 | |
| IL_8R3V_006 | 1/72/188:194, 1/72/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_8R3V_007 | 1/72/239:245, 1/72/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_8R3V_008 | 1/72/269:271, 1/72/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_8R3V_009 | 1/72/274:281, 1/72/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_8R3V_011 | 1/72/293:295, 1/72/343:347 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
| IL_8R3V_012 | 1/72/481:484, 1/72/496:509 | No text annotation | homologous IL_5J7L_255 IL_81516.2 | |
| IL_8R3V_013 | 1/72/536:539, 1/72/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_8R3V_285 | 1/72/564:566, 1/72/575:577 | Isolated non-canonical cWW pair | homologous IL_5J7L_257 IL_07785.1 | |
| IL_8R3V_014 | 1/72/606:610, 1/72/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_8R3V_015 | 1/72/672:674, 1/72/806:808 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_8R3V_016 | 1/72/674:678, 1/72/799:806 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_8R3V_017 | 1/72/697:698, 1/72/763:765 | Single bulged A | geometric IL_5J7L_261 IL_31462.7 | |
| IL_8R3V_018 | 1/72/702:703, 1/72/728:730 | Single bulged G | geometric IL_4V9F_026 IL_00225.14 | |
| IL_8R3V_019 | 1/72/703:707, 1/72/724:728 | Triple sheared | homologous IL_4WF9_024 IL_50730.2 | |
| IL_8R3V_020 | 1/72/738:740, 1/72/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
| IL_8R3V_021 | 1/72/775:777, 1/72/787:791 | Multiple bulged bases | geometric IL_5J7L_265 IL_06549.2 | |
| IL_8R3V_022 | 1/72/844:847, 1/72/933:934 | 90 degree turn | homologous IL_5J7L_267 IL_90729.1 | |
| IL_8R3V_257 | 1/72/844:848, 1/72/930:934 | No text annotation | homologous IL_5J7L_399 IL_96236.1 | |
| IL_8R3V_023 | 1/72/847:848, 1/72/930:933 | Stack outside cWW | geometric IL_5J7L_268 IL_56987.1 | |
| IL_8R3V_024 | 1/72/850:851, 1/72/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_8R3V_025 | 1/72/856:862, 1/72/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 IL_29198.2 | |
| IL_8R3V_026 | 1/72/862:863, 1/72/913:915 | Single bulged G | geometric IL_5J7L_271 IL_00225.14 | |
| IL_8R3V_027 | 1/72/864:868, 1/72/909:912 | C-loop with bulged stacked A's | homologous IL_5J7L_272 IL_26222.2 | |
| IL_8R3V_028 | 1/72/870:872, 1/72/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_28037.2 | |
| IL_8R3V_029 | 1/72/875:879, 1/72/898:902 | Double sheared with non-canonical cWW | homologous IL_5J7L_274 IL_17948.2 | |
| IL_8R3V_030 | 1/72/880:881, 1/72/895:897 | No text annotation | ||
| IL_8R3V_031 | 1/72/994:996, 1/72/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_8R3V_032 | 1/72/998:1002, 1/72/1153:1157 | UAA/GAN | homologous IL_4WF9_036 IL_38507.2 | |
| IL_8R3V_033 | 1/72/1004:1011, 1/72/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
| IL_8R3V_034 | 1/72/1011:1013, 1/72/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_8R3V_035 | 1/72/1018:1024, 1/72/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_8R3V_036 | 1/72/1024:1030, 1/72/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_8R3V_037 | 1/72/1031:1034, 1/72/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 IL_57744.1 | |
| IL_8R3V_038 | 1/72/1038:1041, 1/72/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_8R3V_039 | 1/72/1043:1051, 1/72/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_8R3V_040 | 1/72/1059:1062, 1/72/1076:1079 | No text annotation | homologous IL_6PRV_001 IL_92446.2 | |
| IL_8R3V_041 | 1/72/1087:1091, 1/72/1100:1102 | Major groove platform with extra cWW | geometric IL_5D8H_003 IL_51387.3 | |
| IL_8R3V_043 | 1/72/1196:1198, 1/72/1247:1250 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.3 | |
| IL_8R3V_044 | 1/72/1202:1206, 1/72/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_8R3V_045 | 1/72/1208:1215, 1/72/1234:1238 | Kink-turn | homologous IL_5J7L_288 IL_70923.9 | |
| IL_8R3V_046 | 1/72/1262:1269, 1/72/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_8R3V_047 | 1/72/1310:1313, 1/72/1603:1604 | Major groove platform; stack outside cWW | homologous IL_5J7L_290 IL_50694.7 | |
| IL_8R3V_048 | 1/72/1319:1323, 1/72/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_8R3V_049 | 1/72/1351:1355, 1/72/1376:1380 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
| IL_8R3V_050 | 1/72/1357:1361, 1/72/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_8R3V_051 | 1/72/1415:1416, 1/72/1582:1587 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
| IL_8R3V_052 | 1/72/1417:1421, 1/72/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_8R3V_053 | 1/72/1432:1435, 1/72/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_8R3V_054 | 1/72/1437:1440, 1/72/1551:1555 | tSH-tHW | homologous IL_5J7L_297 IL_99646.2 | |
| IL_8R3V_055 | 1/72/1450:1451, 1/72/1459:1461 | Single bulged U | homologous IL_5J7L_298 IL_89505.4 | |
| IL_8R3V_056 | 1/72/1468:1471, 1/72/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_8R3V_057 | 1/72/1474:1478, 1/72/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_8R3V_058 | 1/72/1481:1482, 1/72/1507:1510 | 180 degree turn | homologous IL_5J7L_301 IL_00881.1 | |
| IL_8R3V_059 | 1/72/1489:1491, 1/72/1499:1500 | Single bulged A | homologous IL_5J7L_302 IL_31462.7 | |
| IL_8R3V_060 | 1/72/1526:1529, 1/72/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_8R3V_061 | 1/72/1651:1656, 1/72/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_8R3V_062 | 1/72/1663:1665, 1/72/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 IL_67095.2 | |
| IL_8R3V_063 | 1/72/1666:1669, 1/72/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_8R3V_259 | 1/72/1666:1674, 1/72/1990:1994 | No text annotation | homologous IL_4WF9_117 IL_22854.4 | |
| IL_8R3V_064 | 1/72/1669:1674, 1/72/1990:1993 | Intercalated tWH | geometric IL_5J7L_307 IL_76758.2 | |
| IL_8R3V_065 | 1/72/1686:1691, 1/72/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_8R3V_066 | 1/72/1712:1718, 1/72/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_8R3V_067 | 1/72/1720:1724, 1/72/1736:1740 | Triple sheared | homologous IL_5J7L_310 IL_50730.2 | |
| IL_8R3V_068 | 1/72/1727:1728, 1/72/1731:1733 | Single bulged C | homologous IL_5J7L_311 IL_61258.15 | |
| IL_8R3V_069 | 1/72/1770:1771, 1/72/1980:1982 | Single bulged A | homologous IL_7A0S_064 IL_31462.7 | |
| IL_8R3V_070 | 1/72/1798:1804, 1/72/1813:1821 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
| IL_8R3V_071 | 1/72/1837:1840, 1/72/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_8R3V_072 | 1/72/1841:1842, 1/72/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.5 | |
| IL_8R3V_073 | 1/72/1846:1849, 1/72/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 IL_68140.4 | |
| IL_8R3V_260 | 1/72/1851:1860, 1/72/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_8R3V_074 | 1/72/1864:1867, 1/72/1874:1878 | UAA/GAN related | homologous IL_5J7L_317 IL_77691.5 | |
| IL_8R3V_075 | 1/72/1933:1934, 1/72/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.4 | |
| IL_8R3V_076 | 1/72/1934:1945, 1/72/1961:1964 | No text annotation | homologous IL_4WF9_077 IL_42218.2 | |
| IL_8R3V_077 | 1/72/2050:2052, 1/72/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_8R3V_078 | 1/72/2054:2056, 1/72/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_8R3V_261 | 1/72/2067:2069, 1/72/2442:2443 | Single bulged U | homologous IL_4WF9_080 IL_89505.4 | |
| IL_8R3V_081 | 1/72/2070:2071, 1/72/2438:2441 | Minor groove platform | geometric IL_7RQB_081 NA | |
| IL_8R3V_082 | 1/72/2081:2083, 1/72/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.2 | |
| IL_8R3V_083 | 1/72/2085:2087, 1/72/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 IL_28037.2 | |
| IL_8R3V_084 | 1/72/2103:2105, 1/72/2184:2186 | Isolated non-canonical cWW pair | geometric IL_1MZP_001 IL_28037.2 | |
| IL_8R3V_085 | 1/72/2107:2110, 1/72/2179:2182 | Tandem non-canonical cWW pairs | geometric IL_4K27_002 IL_77658.1 | |
| IL_8R3V_086 | 1/72/2110:2120, 1/72/2178:2179 | No text annotation | ||
| IL_8R3V_286 | 1/72/2124:2137, 1/72/2154:2174 | No text annotation | ||
| IL_8R3V_088 | 1/72/2202:2204, 1/72/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_8R3V_089 | 1/72/2350:2353, 1/72/2364:2367 | Double sheared | homologous IL_5J7L_333 IL_09705.15 | |
| IL_8R3V_091 | 1/72/2401:2403, 1/72/2414:2415 | No text annotation | ||
| IL_8R3V_263 | 1/72/2453:2454, 1/72/2498:2500 | Single stack bend | homologous IL_5J7L_391 IL_26793.1 | |
| IL_8R3V_264 | 1/72/2454:2455, 1/72/2496:2498 | Major groove platform | homologous IL_9DFE_092 IL_48076.6 | |
| IL_8R3V_265 | 1/72/2457:2459, 1/72/2493:2494 | Major groove platform | homologous IL_5J7L_393 IL_07039.3 | |
| IL_8R3V_094 | 1/72/2459:2461, 1/72/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_4WF9_092 IL_51387.3 | |
| IL_8R3V_095 | 1/72/2466:2470, 1/72/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 IL_17948.2 | |
| IL_8R3V_266 | 1/72/2507:2508, 1/72/2580:2582 | Major groove platform | homologous IL_5J7L_394 IL_07039.3 | |
| IL_8R3V_097 | 1/72/2510:2512, 1/72/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_4WF9_095 IL_07785.1 | |
| IL_8R3V_098 | 1/72/2512:2513, 1/72/2571:2574 | No text annotation | homologous IL_5J7L_341 IL_42626.2 | |
| IL_8R3V_099 | 1/72/2522:2523, 1/72/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_8R3V_101 | 1/72/2591:2592, 1/72/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_8R3V_102 | 1/72/2636:2640, 1/72/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
| IL_8R3V_103 | 1/72/2652:2658, 1/72/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_5J7L_346 IL_16458.4 | |
| IL_8R3V_104 | 1/72/2680:2684, 1/72/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_8R3V_105 | 1/72/2687:2691, 1/72/2718:2722 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_23774.1 | |
| IL_8R3V_106 | 1/72/2695:2696, 1/72/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
| IL_8R3V_107 | 1/72/2737:2742, 1/72/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_8R3V_108 | 1/72/2806:2811, 1/72/2889:2892 | No text annotation | homologous IL_5J7L_351 IL_29471.1 | |
| IL_8R3V_109 | 1/72/2838:2839, 1/72/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.5 | |
| IL_8R3V_110 | 1/72/2843:2846, 1/72/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_8R3V_111 | 1/72/2847:2852, 1/72/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 | |
| IL_8R3V_112 | 1/82/17:18, 1/82/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.7 | |
| IL_8R3V_113 | 1/82/23:28, 1/82/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_8R3V_114 | 1/82/30:31, 1/82/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 IL_68140.4 | |
| IL_8R3V_115 | 1/82/34:38, 1/82/44:48 | Symmetric double minor groove platform | geometric IL_5J7L_358 IL_58103.11 | |
| IL_8R3V_116 | 1/82/71:79, 1/82/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 | |
| IL_8R3V_117 | 1/A1/30:32, 1/A1/552:553 | Single bulged G | homologous IL_5J7L_001 IL_00225.14 | |
| IL_8R3V_118 | 1/A1/44:45, 1/A1/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.7 | |
| IL_8R3V_119 | 1/A1/47:52, 1/A1/359:361 | No text annotation | homologous IL_5J7L_003 IL_14177.2 | |
| IL_8R3V_120 | 1/A1/54:56, 1/A1/356:357 | Minor groove platform | homologous IL_5J7L_004 IL_51454.3 | |
| IL_8R3V_121 | 1/A1/63:66, 1/A1/103:104 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.5 | |
| IL_8R3V_122 | 1/A1/67:69, 1/A1/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
| IL_8R3V_123 | 1/A1/70:73, 1/A1/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
| IL_8R3V_124 | 1/A1/75:77, 1/A1/92:95 | Single bulged G, near cWW | homologous IL_5J7L_008 NA | |
| IL_8R3V_125 | 1/A1/128:131, 1/A1/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_8R3V_126 | 1/A1/132:136, 1/A1/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_8R3V_127 | 1/A1/144:146, 1/A1/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.6 | |
| IL_8R3V_128 | 1/A1/147:153, 1/A1/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_8R3V_129 | 1/A1/242:247, 1/A1/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_8R3V_130 | 1/A1/249:252, 1/A1/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_8R3V_131 | 1/A1/292:293, 1/A1/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_8R3V_132 | 1/A1/367:369, 1/A1/392:393 | Single bulged U | homologous IL_4LFB_014 IL_89505.4 | |
| IL_8R3V_133 | 1/A1/371:375, 1/A1/389:390 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_8R3V_287 | 1/A1/375:376, 1/A1/387:389 | Single bulged G | homologous IL_5J7L_019 IL_00225.14 | |
| IL_8R3V_135 | 1/A1/409:416, 1/A1/427:433 | No text annotation | geometric IL_4LFB_017 IL_28026.3 | |
| IL_8R3V_137 | 1/A1/440:442, 1/A1/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_8R3V_138 | 1/A1/446:450, 1/A1/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 IL_88269.4 | |
| IL_8R3V_139 | 1/A1/450:455, 1/A1/477:483 | No text annotation | geometric IL_5J7L_023 IL_70801.1 | |
| IL_8R3V_140 | 1/A1/504:511, 1/A1/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_8R3V_141 | 1/A1/515:521, 1/A1/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_8R3V_142 | 1/A1/569:575, 1/A1/880:881 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
| IL_8R3V_143 | 1/A1/580:584, 1/A1/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_8R3V_145 | 1/A1/594:596, 1/A1/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_8R3V_146 | 1/A1/597:598, 1/A1/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_8R3V_147 | 1/A1/605:612, 1/A1/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_8R3V_148 | 1/A1/654:655, 1/A1/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 IL_50694.7 | |
| IL_8R3V_149 | 1/A1/658:659, 1/A1/746:748 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_8R3V_150 | 1/A1/662:666, 1/A1/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_8R3V_151 | 1/A1/673:678, 1/A1/712:717 | No text annotation | homologous IL_5J7L_034 NA | |
| IL_8R3V_153 | 1/A1/684:688, 1/A1/699:706 | Kink-turn | geometric IL_5J7L_035 IL_01488.3 | |
| IL_8R3V_154 | 1/A1/774:779, 1/A1/803:805 | Other IL | geometric IL_4V88_435 NA | |
| IL_8R3V_155 | 1/A1/779:783, 1/A1/799:803 | tSH-tHW-tHS | geometric IL_4LFB_033 IL_17136.7 | |
| IL_8R3V_288 | 1/A1/887:894, 1/A1/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_8R3V_158 | 1/A1/922:923, 1/A1/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_31462.7 | |
| IL_8R3V_269 | 1/A1/925:927, 1/A1/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.14 | |
| IL_8R3V_160 | 1/A1/933:935, 1/A1/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_8R3V_161 | 1/A1/953:954, 1/A1/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_8R3V_162 | 1/A1/993:997, 1/A1/1043:1045 | No text annotation | geometric IL_8C3A_432 NA | |
| IL_8R3V_271 | 1/A1/993:999, 1/A1/1041:1045 | No text annotation | ||
| IL_8R3V_163 | 1/A1/997:999, 1/A1/1041:1043 | Isolated non-canonical cWW pair | geometric IL_5J7L_259 IL_87907.2 | |
| IL_8R3V_272 | 1/A1/1003:1007, 1/A1/1022:1037 | No text annotation | ||
| IL_8R3V_164 | 1/A1/1048:1050, 1/A1/1208:1209 | Single bulged U | geometric IL_5J7L_046 IL_89505.4 | |
| IL_8R3V_166 | 1/A1/1052:1056, 1/A1/1204:1206 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
| IL_8R3V_289 | 1/A1/1057:1058, 1/A1/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_8R3V_168 | 1/A1/1060:1061, 1/A1/1195:1197 | Single bulged A | geometric IL_5J7L_049 IL_31462.7 | |
| IL_8R3V_169 | 1/A1/1061:1063, 1/A1/1193:1195 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_28037.2 | |
| IL_8R3V_170 | 1/A1/1122:1128, 1/A1/1144:1151 | No text annotation | ||
| IL_8R3V_171 | 1/A1/1129:1132, 1/A1/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_8R3V_172 | 1/A1/1158:1161, 1/A1/1175:1181 | No text annotation | homologous IL_5J7L_053 IL_42032.1 | |
| IL_8R3V_174 | 1/A1/1247:1253, 1/A1/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_8R3V_175 | 1/A1/1255:1258, 1/A1/1277:1282 | 180 degree turn | homologous IL_5J7L_055 IL_11344.2 | |
| IL_8R3V_176 | 1/A1/1259:1263, 1/A1/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 IL_17948.2 | |
| IL_8R3V_177 | 1/A1/1303:1308, 1/A1/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_8R3V_178 | 1/A1/1399:1401, 1/A1/1501:1504 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
| IL_8R3V_179 | 1/A1/1401:1404, 1/A1/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_8R3V_274 | 1/A1/1405:1407, 1/A1/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 IL_87907.2 | |
| IL_8R3V_275 | 1/A1/1407:1409, 1/A1/1491:1494 | No text annotation | homologous IL_4LFB_070 IL_31531.3 | |
| IL_8R3V_181 | 1/A1/1412:1414, 1/A1/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_8R3V_276 | 1/A1/1416:1419, 1/A1/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_8R3V_183 | 1/A1/1422:1425, 1/A1/1476:1478 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_8R3V_290 | 1/A1/1425:1426, 1/A1/1474:1476 | Single stack bend | geometric IL_7MLX_001 IL_90729.1 | |
| IL_8R3V_185 | 1/A1/1430:1435, 1/A1/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_8R3V_186 | 1/A1/1437:1443, 1/A1/1459:1464 | No text annotation | ||
| IL_8R3V_187 | 1/A1/1443:1448, 1/A1/1455:1459 | No text annotation | ||
| IL_8R3V_188 | 1/A1/1536:1538, 1/V2/11:14 | No text annotation | ||
| IL_8R3V_277 | 1/A1/1536:1539, 1/V2/10:14 | No text annotation | ||
| IL_8R3V_190 | 1/A2/30:32, 1/A2/552:553 | Single bulged G | geometric IL_6CZR_113 NA | |
| IL_8R3V_191 | 1/A2/44:45, 1/A2/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.7 | |
| IL_8R3V_192 | 1/A2/47:52, 1/A2/359:361 | No text annotation | homologous IL_5J7L_003 IL_14177.2 | |
| IL_8R3V_193 | 1/A2/54:56, 1/A2/356:357 | Minor groove platform | homologous IL_6CZR_116 NA | |
| IL_8R3V_194 | 1/A2/63:66, 1/A2/103:104 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.5 | |
| IL_8R3V_195 | 1/A2/67:69, 1/A2/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
| IL_8R3V_196 | 1/A2/69:73, 1/A2/97:99 | No text annotation | ||
| IL_8R3V_198 | 1/A2/75:77, 1/A2/92:95 | Isolated non-canonical cWW with bulges | geometric IL_3KTW_002 NA | |
| IL_8R3V_199 | 1/A2/128:131, 1/A2/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_8R3V_200 | 1/A2/132:136, 1/A2/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_8R3V_201 | 1/A2/144:146, 1/A2/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.6 | |
| IL_8R3V_202 | 1/A2/147:153, 1/A2/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_8R3V_203 | 1/A2/242:247, 1/A2/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_8R3V_291 | 1/A2/249:252, 1/A2/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_8R3V_205 | 1/A2/292:293, 1/A2/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_8R3V_206 | 1/A2/367:369, 1/A2/392:393 | Single bulged U | homologous IL_4LFB_014 IL_89505.4 | |
| IL_8R3V_207 | 1/A2/371:376, 1/A2/387:390 | C-loop with extra cWW pair | geometric IL_4V88_408 NA | |
| IL_8R3V_208 | 1/A2/409:418, 1/A2/425:433 | No text annotation | ||
| IL_8R3V_209 | 1/A2/446:450, 1/A2/483:488 | tSH-tHW-tWW | geometric IL_5J7L_022 IL_88269.4 | |
| IL_8R3V_210 | 1/A2/450:455, 1/A2/477:483 | No text annotation | homologous IL_5J7L_023 IL_70801.1 | |
| IL_8R3V_212 | 1/A2/504:511, 1/A2/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_8R3V_213 | 1/A2/515:521, 1/A2/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_8R3V_214 | 1/A2/569:575, 1/A2/880:881 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
| IL_8R3V_215 | 1/A2/580:584, 1/A2/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_8R3V_216 | 1/A2/594:596, 1/A2/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_8R3V_217 | 1/A2/597:598, 1/A2/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_8R3V_218 | 1/A2/605:612, 1/A2/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_8R3V_219 | 1/A2/654:655, 1/A2/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
| IL_8R3V_220 | 1/A2/658:659, 1/A2/746:748 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_8R3V_221 | 1/A2/662:666, 1/A2/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_8R3V_279 | 1/A2/673:677, 1/A2/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_8R3V_223 | 1/A2/684:688, 1/A2/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_8R3V_224 | 1/A2/774:778, 1/A2/804:805 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_8R3V_225 | 1/A2/779:783, 1/A2/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
| IL_8R3V_227 | 1/A2/887:894, 1/A2/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_8R3V_228 | 1/A2/922:923, 1/A2/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_31462.7 | |
| IL_8R3V_229 | 1/A2/925:927, 1/A2/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.14 | |
| IL_8R3V_230 | 1/A2/933:935, 1/A2/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_8R3V_231 | 1/A2/953:954, 1/A2/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_8R3V_232 | 1/A2/993:997, 1/A2/1044:1045 | Minor groove platform | homologous IL_4LFB_039 IL_47078.3 | |
| IL_8R3V_280 | 1/A2/997:999, 1/A2/1041:1044 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_8R3V_233 | 1/A2/998:999, 1/A2/1041:1043 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_8R3V_292 | 1/A2/1003:1007, 1/A2/1022:1037 | No text annotation | ||
| IL_8R3V_234 | 1/A2/1048:1050, 1/A2/1208:1209 | Single bulged U | geometric IL_5J7L_046 IL_89505.4 | |
| IL_8R3V_236 | 1/A2/1052:1056, 1/A2/1204:1206 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
| IL_8R3V_237 | 1/A2/1057:1058, 1/A2/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_8R3V_238 | 1/A2/1060:1061, 1/A2/1195:1197 | Single bulged A | geometric IL_5J7L_049 IL_31462.7 | |
| IL_8R3V_239 | 1/A2/1061:1063, 1/A2/1193:1195 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_28037.2 | |
| IL_8R3V_240 | 1/A2/1124:1128, 1/A2/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_8R3V_241 | 1/A2/1129:1132, 1/A2/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_8R3V_242 | 1/A2/1158:1161, 1/A2/1175:1181 | No text annotation | homologous IL_5J7L_053 IL_42032.1 | |
| IL_8R3V_243 | 1/A2/1247:1253, 1/A2/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_8R3V_244 | 1/A2/1255:1258, 1/A2/1277:1282 | 180 degree turn | homologous IL_5J7L_055 IL_11344.2 | |
| IL_8R3V_245 | 1/A2/1259:1263, 1/A2/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 IL_17948.2 | |
| IL_8R3V_246 | 1/A2/1303:1308, 1/A2/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_8R3V_247 | 1/A2/1399:1401, 1/A2/1501:1504 | No text annotation | geometric IL_5J7L_058 IL_61438.4 | |
| IL_8R3V_248 | 1/A2/1401:1404, 1/A2/1497:1501 | No text annotation | homologous IL_5J7L_059 IL_65718.4 | |
| IL_8R3V_282 | 1/A2/1405:1407, 1/A2/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 IL_87907.2 | |
| IL_8R3V_283 | 1/A2/1407:1409, 1/A2/1491:1494 | No text annotation | homologous IL_4LFB_070 IL_31531.3 | |
| IL_8R3V_250 | 1/A2/1412:1414, 1/A2/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_8R3V_251 | 1/A2/1416:1419, 1/A2/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_8R3V_252 | 1/A2/1430:1435, 1/A2/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_8R3V_253 | 1/A2/1440:1442, 1/A2/1460:1461 | Single bulged A | homologous IL_5J7L_064 IL_31462.7 | |
| IL_8R3V_284 | 1/A2/1445:1448, 1/A2/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8R3V_010 | Isolated non-canonical cWW pair | ||
| IL_8R3V_042 | No text annotation | ||
| IL_8R3V_258 | Isolated non-canonical cWW pair | ||
| IL_8R3V_079 | Tandem non-canonical cWW pairs | ||
| IL_8R3V_080 | Isolated non-canonical cWW pair | ||
| IL_8R3V_262 | No text annotation | ||
| IL_8R3V_087 | No text annotation | ||
| IL_8R3V_090 | No text annotation | ||
| IL_8R3V_092 | No text annotation | ||
| IL_8R3V_093 | Major groove platform with extra pair | ||
| IL_8R3V_096 | No text annotation | ||
| IL_8R3V_100 | Tandem non-canonical cWW pairs | ||
| IL_8R3V_267 | No text annotation | ||
| IL_8R3V_134 | Single bulged G, near cWW | ||
| IL_8R3V_136 | Isolated non-canonical cWW pair | ||
| IL_8R3V_144 | Isolated non-canonical cWW pair | ||
| IL_8R3V_152 | Isolated non-canonical cWW pair | ||
| IL_8R3V_268 | No text annotation | ||
| IL_8R3V_156 | Tandem non-canonical cWW pairs | ||
| IL_8R3V_157 | 9x7 Sarcin-Ricin with inserted C; G-bulge | ||
| IL_8R3V_159 | Isolated non-canonical cWW pair | ||
| IL_8R3V_270 | Isolated non-canonical cWW pair | ||
| IL_8R3V_165 | No text annotation | ||
| IL_8R3V_273 | No text annotation | ||
| IL_8R3V_167 | No text annotation | ||
| IL_8R3V_173 | Isolated non-canonical cWW pair | ||
| IL_8R3V_180 | No text annotation | ||
| IL_8R3V_182 | No text annotation | ||
| IL_8R3V_184 | No text annotation | ||
| IL_8R3V_189 | Isolated non-canonical cWW pair | ||
| IL_8R3V_197 | Isolated non-canonical cWW pair | ||
| IL_8R3V_204 | No text annotation | ||
| IL_8R3V_278 | No text annotation | ||
| IL_8R3V_211 | No text annotation | ||
| IL_8R3V_222 | No text annotation | ||
| IL_8R3V_226 | Isolated cWH basepair | ||
| IL_8R3V_281 | No text annotation | ||
| IL_8R3V_235 | No text annotation | ||
| IL_8R3V_249 | No text annotation | ||
| IL_8R3V_254 | No text annotation | ||
| IL_8R3V_255 | Isolated non-canonical cWW pair | ||
| IL_8R3V_256 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8R3V_030 | 1/72/30:31, 1/72/474:481, 1/72/509:510 | No text annotation | geometric J3_5J7L_036 J3_60031.2 | |
| J3_8R3V_031 | 1/72/30:31, 1/72/474:484, 1/72/496:510 | No text annotation | homologous J3_5J7L_066 J3_92134.2 | |
| J3_8R3V_032 | 1/72/32:35, 1/72/445:461, 1/72/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_8R3V_033 | 1/72/56:57, 1/72/70:76, 1/72/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_8R3V_034 | 1/72/297:301, 1/72/316:325, 1/72/337:341 | No text annotation | homologous J3_5J7L_068 J3_46299.2 | |
| J3_8R3V_001 | 1/72/683:689, 1/72/773:775, 1/72/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_8R3V_002 | 1/72/698:700, 1/72/732:736, 1/72/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_8R3V_003 | 1/72/1055:1058, 1/72/1080:1087, 1/72/1102:1104 | No text annotation | ||
| J3_8R3V_035 | 1/72/1055:1057, 1/72/1081:1090, 1/72/1101:1104 | No text annotation | ||
| J3_8R3V_004 | 1/72/1298:1303, 1/72/1625:1627, 1/72/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_8R3V_005 | 1/72/1306:1309, 1/72/1605:1611, 1/72/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
| J3_8R3V_036 | 1/72/1344:1349, 1/72/1382:1385, 1/72/1402:1403 | No text annotation | homologous J3_5J7L_043 J3_92705.1 | |
| J3_8R3V_037 | 1/72/1424:1429, 1/72/1564:1565, 1/72/1568:1574 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_8R3V_006 | 1/72/2091:2093, 1/72/2196:2200, 1/72/2223:2228 | Kink-turn 3-way junction | homologous J3_5J7L_044 J3_89368.5 | |
| J3_8R3V_038 | 1/72/2282:2284, 1/72/2384:2395, 1/72/2421:2427 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_8R3V_007 | 1/72/2295:2299, 1/72/2317:2323, 1/72/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_8R3V_008 | 1/72/2517:2520, 1/72/2545:2547, 1/72/2561:2567 | No text annotation | homologous J3_5J7L_046 J3_32601.5 | |
| J3_8R3V_039 | 1/72/2789:2791, 1/72/2805:2806, 1/72/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_8R3V_009 | 1/72/2812:2815, 1/72/2831:2836, 1/72/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J3_8R3V_010 | 1/82/10:16, 1/82/68:70, 1/82/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
| J3_8R3V_040 | 1/A1/46:52, 1/A1/359:367, 1/A1/393:395 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_8R3V_055 | 1/A1/586:588, 1/A1/651:654, 1/A1/754:755 | No text annotation | geometric J3_5J7L_002 J3_56052.5 | |
| J3_8R3V_056 | 1/A1/586:588, 1/A1/651:655, 1/A1/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_8R3V_011 | 1/A1/671:673, 1/A1/717:725, 1/A1/732:735 | No text annotation | ||
| J3_8R3V_012 | 1/A1/826:829, 1/A1/857:861, 1/A1/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_8R3V_013 | 1/A1/936:939, 1/A1/1344:1350, 1/A1/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_8R3V_014 | 1/A1/943:946, 1/A1/1235:1237, 1/A1/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_8R3V_015 | 1/A1/955:962, 1/A1/973:984, 1/A1/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
| J3_8R3V_016 | 1/A1/990:993, 1/A1/1045:1047, 1/A1/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_8R3V_017 | 1/A1/1003:1007, 1/A1/1022:1028, 1/A1/1033:1037 | No text annotation | ||
| J3_8R3V_018 | 1/A1/1063:1068, 1/A1/1107:1113, 1/A1/1187:1193 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
| J3_8R3V_043 | 1/A1/1073:1074, 1/A1/1083:1087, 1/A1/1098:1102 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_8R3V_019 | 1/A1/1116:1118, 1/A1/1155:1158, 1/A1/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_8R3V_044 | 1/A1/1116:1118, 1/A1/1155:1161, 1/A1/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_8R3V_020 | 1/A1/1237:1241, 1/A1/1296:1303, 1/A1/1334:1337 | No text annotation | homologous J3_5J7L_011 J3_37047.6 | |
| J3_8R3V_045 | 1/A1/1237:1243, 1/A1/1294:1303, 1/A1/1334:1337 | No text annotation | ||
| J3_8R3V_046 | 1/A2/46:47, 1/A2/361:367, 1/A2/393:395 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_8R3V_047 | 1/A2/46:52, 1/A2/359:367, 1/A2/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_8R3V_048 | 1/A2/586:588, 1/A2/651:654, 1/A2/754:755 | No text annotation | geometric J3_5J7L_002 J3_56052.5 | |
| J3_8R3V_049 | 1/A2/586:588, 1/A2/651:655, 1/A2/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_8R3V_050 | 1/A2/672:673, 1/A2/717:725, 1/A2/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_8R3V_021 | 1/A2/826:829, 1/A2/857:861, 1/A2/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_8R3V_022 | 1/A2/936:939, 1/A2/1344:1350, 1/A2/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_8R3V_023 | 1/A2/943:946, 1/A2/1235:1237, 1/A2/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_8R3V_024 | 1/A2/955:962, 1/A2/973:984, 1/A2/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
| J3_8R3V_025 | 1/A2/990:993, 1/A2/1045:1047, 1/A2/1210:1215 | No text annotation | homologous J3_5J7L_007 J3_82572.1 | |
| J3_8R3V_051 | 1/A2/990:997, 1/A2/1044:1047, 1/A2/1210:1215 | No text annotation | homologous J3_5J7L_053 J3_76475.2 | |
| J3_8R3V_026 | 1/A2/1003:1007, 1/A2/1022:1028, 1/A2/1033:1037 | No text annotation | ||
| J3_8R3V_027 | 1/A2/1063:1068, 1/A2/1107:1113, 1/A2/1187:1193 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
| J3_8R3V_057 | 1/A2/1073:1074, 1/A2/1083:1086, 1/A2/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_8R3V_028 | 1/A2/1116:1118, 1/A2/1155:1158, 1/A2/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_8R3V_058 | 1/A2/1116:1118, 1/A2/1155:1161, 1/A2/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_8R3V_029 | 1/A2/1237:1241, 1/A2/1296:1303, 1/A2/1334:1337 | No text annotation | homologous J3_5J7L_011 J3_37047.6 | |
| J4_8R3V_001 | 1/72/268:269, 1/72/370:375, 1/72/399:406, 1/72/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_8R3V_002 | 1/72/297:301, 1/72/316:319, 1/72/323:325, 1/72/337:341 | No text annotation | homologous J4_5J7L_019 J4_71729.5 | |
| J4_8R3V_003 | 1/72/601:604, 1/72/624:628, 1/72/635:638, 1/72/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_8R3V_004 | 1/72/1270:1276, 1/72/1294:1295, 1/72/1645:1648, 1/72/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_8R3V_005 | 1/72/1310:1314, 1/72/1338:1343, 1/72/1404:1405, 1/72/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_8R3V_006 | 1/72/1313:1314, 1/72/1338:1343, 1/72/1404:1405, 1/72/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_8R3V_007 | 1/72/1444:1445, 1/72/1466:1467, 1/72/1525:1526, 1/72/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_8R3V_008 | 1/72/1772:1776, 1/72/1788:1792, 1/72/1827:1830, 1/72/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_8R3V_009 | 1/72/1833:1835, 1/72/1905:1906, 1/72/1924:1933, 1/72/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_8R3V_010 | 1/72/2285:2289, 1/72/2343:2347, 1/72/2370:2372, 1/72/2381:2383 | No text annotation | homologous J4_5J7L_027 J4_04930.6 | |
| J4_8R3V_011 | 1/72/2643:2646, 1/72/2674:2676, 1/72/2731:2735, 1/72/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J4_8R3V_012 | 1/A1/115:123, 1/A1/238:240, 1/A1/286:289, 1/A1/311:312 | No text annotation | ||
| J4_8R3V_013 | 1/A1/142:144, 1/A1/178:184, 1/A1/193:199, 1/A1/218:221 | No text annotation | ||
| J4_8R3V_014 | 1/A1/569:577, 1/A1/764:769, 1/A1/810:821, 1/A1/879:881 | No text annotation | ||
| J4_8R3V_021 | 1/A2/115:122, 1/A2/239:240, 1/A2/286:289, 1/A2/311:312 | No text annotation | homologous J4_5J7L_001 J4_35578.3 | |
| J4_8R3V_016 | 1/A2/142:144, 1/A2/178:184, 1/A2/193:199, 1/A2/218:221 | No text annotation | ||
| J4_8R3V_017 | 1/A2/575:577, 1/A2/764:769, 1/A2/810:821, 1/A2/879:880 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
| J4_8R3V_018 | 1/W/7:10, 1/W/25:27, 1/W/43:49, 1/W/65:66 | tRNA junction | homologous J4_7EQJ_002 J4_70449.29 | |
| J4_8R3V_019 | 1/X2/7:10, 1/X2/26:28, 1/X2/44:50, 1/X2/66:67 | tRNA junction | homologous J4_6CFJ_015 J4_70449.29 | |
| J4_8R3V_020 | 1/Y2/7:10, 1/Y2/25:27, 1/Y2/43:49, 1/Y2/65:66 | tRNA junction | homologous J4_3TUP_001 J4_70449.29 | |
| J5_8R3V_001 | 1/72/47:54, 1/72/116:121, 1/72/130:131, 1/72/148:150, 1/72/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_8R3V_002 | 1/72/531:533, 1/72/560:564, 1/72/577:579, 1/72/1261:1262, 1/72/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_8R3V_003 | 1/72/584:589, 1/72/668:671, 1/72/809:812, 1/72/1195:1196, 1/72/1250:1256 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_8R3V_004 | 1/72/1674:1682, 1/72/1706:1707, 1/72/1751:1752, 1/72/1756:1764, 1/72/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_8R3V_005 | 1/72/2057:2064, 1/72/2446:2453, 1/72/2500:2507, 1/72/2582:2588, 1/72/2606:2611 | No text annotation | ||
| J5_8R3V_006 | 1/72/2074:2077, 1/72/2243:2246, 1/72/2258:2259, 1/72/2281:2282, 1/72/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
| J5_8R3V_007 | 1/A1/36:39, 1/A1/403:406, 1/A1/436:440, 1/A1/497:500, 1/A1/545:548 | No text annotation | homologous J5_5J7L_001 J5_92941.1 | |
| J5_8R3V_008 | 1/A1/36:39, 1/A1/403:406, 1/A1/436:442, 1/A1/492:500, 1/A1/545:548 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
| J5_8R3V_009 | 1/A1/58:61, 1/A1/106:113, 1/A1/314:316, 1/A1/337:339, 1/A1/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J5_8R3V_010 | 1/A2/36:39, 1/A2/403:406, 1/A2/436:442, 1/A2/492:500, 1/A2/545:548 | No text annotation | ||
| J5_8R3V_011 | 1/A2/58:61, 1/A2/106:113, 1/A2/314:316, 1/A2/337:339, 1/A2/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J6_8R3V_001 | 1/72/45:46, 1/72/179:183, 1/72/214:224, 1/72/231:235, 1/72/262:266, 1/72/426:433 | No text annotation | ||
| J6_8R3V_002 | 1/72/2074:2077, 1/72/2243:2246, 1/72/2258:2259, 1/72/2281:2284, 1/72/2384:2395, 1/72/2421:2435 | No text annotation | ||
| J7_8R3V_001 | 1/72/8:15, 1/72/525:531, 1/72/2018:2023, 1/72/2040:2043, 1/72/2625:2630, 1/72/2788:2789, 1/72/2894:2895 | No text annotation | ||
| J7_8R3V_002 | 1/72/817:822, 1/72/835:838, 1/72/940:946, 1/72/971:976, 1/72/987:991, 1/72/1163:1164, 1/72/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8R3V_041 | No text annotation | ||
| J3_8R3V_042 | No text annotation | ||
| J3_8R3V_052 | No text annotation | ||
| J3_8R3V_053 | No text annotation | ||
| J3_8R3V_054 | No text annotation | ||
| J4_8R3V_015 | No text annotation |
Coloring options: