Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8R3V_0011/71/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_8R3V_0021/72/59:68No text annotation
homologous
HL_5J7L_134
HL_35677.3
HL_8R3V_0031/72/87:95No text annotation
homologous
HL_5J7L_135
HL_80241.1
HL_8R3V_0041/72/123:128No text annotation
homologous
HL_5J7L_136
HL_82710.2
HL_8R3V_0051/72/137:142UNCG
geometric
HL_4LFB_031
HL_34617.5
HL_8R3V_0061/72/158:168No text annotation
homologous
HL_5J7L_138
HL_68257.1
HL_8R3V_0071/72/194:201No text annotation
homologous
HL_4WF9_006
HL_30068.2
HL_8R3V_0081/72/225:230No text annotation
homologous
HL_5J7L_140
HL_62934.1
HL_8R3V_0091/72/246:252No text annotation
homologous
HL_5J7L_141
HL_37369.2
HL_8R3V_0101/72/305:312T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
HL_01609.3
HL_8R3V_0111/72/319:323No text annotation
homologous
HL_7RQB_011
NA
HL_8R3V_0121/72/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
HL_27670.2
HL_8R3V_0131/72/382:392No text annotation
homologous
HL_5J7L_145
HL_91503.7
HL_8R3V_0141/72/410:417Pseudoknot geometry
homologous
HL_5J7L_146
HL_30680.3
HL_8R3V_0151/72/462:467GNRA
homologous
HL_4WF9_015
HL_37824.8
HL_8R3V_0161/72/487:493GNRA
homologous
HL_5J7L_148
HL_37824.8
HL_8R3V_0171/72/544:549UNCG variation
geometric
HL_2CZJ_007
NA
HL_8R3V_1571/72/566:575T-loop with 2 stacked bulged bases
homologous
HL_5J7L_150
HL_28252.9
HL_8R3V_0191/72/611:617No text annotation
homologous
HL_5J7L_151
HL_80922.2
HL_8R3V_0201/72/629:634GNRA
homologous
HL_5J7L_152
HL_37824.8
HL_8R3V_0211/72/641:647No text annotation
homologous
HL_5J7L_153
HL_13529.1
HL_8R3V_0221/72/712:719GNRA wlth tandem sheared
homologous
HL_5J7L_154
HL_81538.2
HL_8R3V_0231/72/744:753No text annotation
homologous
HL_5J7L_155
HL_88205.2
HL_8R3V_0241/72/779:785No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_8R3V_0251/72/826:831No text annotation
homologous
HL_4WF9_025
HL_55195.3
HL_8R3V_0261/72/885:891No text annotation
homologous
HL_5J7L_158
NA
HL_8R3V_1501/72/955:962GNRA
homologous
HL_5J7L_211
HL_37824.8
HL_8R3V_0281/72/978:985No text annotation
homologous
HL_7A0S_027
HL_42998.2
HL_8R3V_0291/72/1064:1074No text annotation
homologous
HL_6PRV_001
HL_19210.3
HL_8R3V_0301/72/1092:1099GNRA wlth tandem sheared
homologous
HL_6PRV_002
HL_81538.2
HL_8R3V_0311/72/1172:1177Mini UNCG
geometric
HL_4YAZ_004
HL_48778.2
HL_8R3V_0321/72/1222:1227GNRA
homologous
HL_5J7L_164
HL_37824.8
HL_8R3V_0331/72/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
HL_28252.9
HL_8R3V_0341/72/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
HL_57176.2
HL_8R3V_0351/72/1363:1368GNRA
homologous
HL_5J7L_167
HL_37824.8
HL_8R3V_0361/72/1389:1398No text annotation
homologous
HL_5J7L_168
HL_81545.2
HL_8R3V_0371/72/1451:1459Mini UNCG with extended bulge
geometric
HL_5J7L_169
HL_22622.1
HL_8R3V_0381/72/1492:1498Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
HL_57176.2
HL_8R3V_0391/72/1533:1538No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_8R3V_0401/72/1565:1568No text annotation
homologous
HL_7RQB_039
NA
HL_8R3V_0411/72/1612:1619No text annotation
homologous
HL_5J7L_173
HL_89567.2
HL_8R3V_0421/72/1630:1636GNRA
homologous
HL_5J7L_174
HL_37824.8
HL_8R3V_0431/72/1691:1696UNCG
geometric
HL_5J7L_175
HL_34617.5
HL_8R3V_0441/72/1728:1731No text annotation
geometric
HL_5J7L_176
HL_32346.4
HL_8R3V_0451/72/1752:1756No text annotation
homologous
HL_5J7L_177
HL_80709.3
HL_8R3V_0461/72/1777:1787No text annotation
homologous
HL_7RQB_045
NA
HL_8R3V_0471/72/1806:1811GNRA related
homologous
HL_5J7L_179
HL_04783.2
HL_8R3V_0481/72/1868:1873GNRA variation
homologous
HL_5J7L_180
HL_37824.8
HL_8R3V_0491/72/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_8R3V_0501/72/1949:1957No text annotation
homologous
HL_5J7L_182
HL_20167.2
HL_8R3V_0511/72/2027:2036No text annotation
homologous
HL_5J7L_183
HL_61996.3
HL_8R3V_1511/72/2138:2153No text annotation
HL_8R3V_0521/72/2143:2148No text annotation
HL_8R3V_0531/72/2209:2215No text annotation
homologous
HL_5J7L_185
HL_49922.4
HL_8R3V_0541/72/2248:2256No text annotation
homologous
HL_7RQB_053
NA
HL_8R3V_0551/72/2264:2276No text annotation
homologous
HL_7RQB_054
NA
HL_8R3V_1581/72/2304:2312No text annotation
homologous
HL_5J7L_219
HL_50860.2
HL_8R3V_0571/72/2324:2331Pseudoknot geometry
homologous
HL_5J7L_189
HL_93324.4
HL_8R3V_0581/72/2356:2361GNRA
homologous
HL_5J7L_190
HL_37824.8
HL_8R3V_0591/72/2374:2379GNRA
homologous
HL_5J7L_191
HL_37824.8
HL_8R3V_0601/72/2404:2413No text annotation
homologous
HL_5J7L_192
HL_53454.2
HL_8R3V_0611/72/2471:2479No text annotation
homologous
HL_4WF9_056
HL_32735.2
HL_8R3V_0621/72/2528:2535GNRA variation
homologous
HL_5J7L_194
HL_31585.4
HL_8R3V_0631/72/2551:2557No text annotation
homologous
HL_4WF9_058
HL_30068.2
HL_8R3V_0641/72/2594:2599GNRA
homologous
HL_5J7L_196
HL_37824.8
HL_8R3V_0651/72/2658:2663GNRA
geometric
HL_5TBW_186
NA
HL_8R3V_0661/72/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
HL_65794.5
HL_8R3V_0671/72/2745:2759No text annotation
homologous
HL_5J7L_199
HL_74055.2
HL_8R3V_0681/72/2795:2801UNCG variation
homologous
HL_5J7L_200
HL_08100.1
HL_8R3V_0691/72/2819:2827No text annotation
homologous
HL_5J7L_201
HL_64690.6
HL_8R3V_0701/72/2856:2861GNRA
homologous
HL_5J7L_202
HL_37824.8
HL_8R3V_1521/82/34:48No text annotation
homologous
HL_5J7L_215
HL_97756.2
HL_8R3V_0711/82/38:44No text annotation
homologous
HL_5J7L_203
HL_47787.2
HL_8R3V_0721/82/86:90Mini UNCG
homologous
HL_5J7L_204
HL_48778.2
HL_8R3V_1591/A1/12:22No text annotation
homologous
HL_5J7L_001
HL_89881.5
HL_8R3V_1601/A1/82:87No text annotation
HL_8R3V_0751/A1/158:163GNRA
homologous
HL_4LFB_003
HL_37824.8
HL_8R3V_0761/A1/186:191GNRA
homologous
HL_5J7L_004
HL_37824.8
HL_8R3V_0771/A1/203:214No text annotation
HL_8R3V_0781/A1/259:267GNRA related
homologous
HL_5J7L_006
HL_84299.4
HL_8R3V_0791/A1/296:301GNRA
homologous
HL_5J7L_007
HL_37824.8
HL_8R3V_0801/A1/320:333No text annotation
homologous
HL_6CZR_079
NA
HL_8R3V_0811/A1/342:347UNCG
homologous
HL_5J7L_009
HL_34617.5
HL_8R3V_0821/A1/379:384GNRA
homologous
HL_5J7L_010
HL_37824.8
HL_8R3V_0831/A1/419:424UNCG
homologous
HL_4LFB_011
HL_34617.5
HL_8R3V_0841/A1/462:470GNRA wlth extra near cWW
homologous
HL_5J7L_012
HL_81538.2
HL_8R3V_1531/A1/522:527GNRA variation
homologous
HL_5J7L_205
HL_37824.8
HL_8R3V_0861/A1/617:623GNRA-like with tWH
homologous
HL_5J7L_014
HL_10453.3
HL_8R3V_0871/A1/689:698No text annotation
homologous
HL_4LFB_015
HL_75293.5
HL_8R3V_0881/A1/726:731GNRA
homologous
HL_5J7L_016
HL_37824.8
HL_8R3V_0891/A1/786:796No text annotation
homologous
HL_5J7L_017
HL_75293.5
HL_8R3V_0901/A1/840:846No text annotation
HL_8R3V_0911/A1/862:867GNRA
homologous
HL_4LFB_019
HL_37824.8
HL_8R3V_0921/A1/897:902GNRA
homologous
HL_4LFB_020
HL_37824.8
HL_8R3V_0931/A1/963:972No text annotation
homologous
HL_5J7L_021
HL_50779.4
HL_8R3V_0941/A1/1012:1017GNRA
homologous
HL_4LFB_022
HL_37824.8
HL_8R3V_0951/A1/1028:1033No text annotation
geometric
HL_7A0S_011
HL_75660.5
HL_8R3V_0961/A1/1076:1081GNRA
homologous
HL_5J7L_023
HL_37824.8
HL_8R3V_0971/A1/1089:1096T-loop related
homologous
HL_4LFB_025
HL_77436.5
HL_8R3V_0981/A1/1134:1140No text annotation
homologous
HL_4LFB_026
HL_87954.2
HL_8R3V_0991/A1/1165:1171GNRA
homologous
HL_4LFB_027
HL_37824.8
HL_8R3V_1001/A1/1265:1270GNRA
homologous
HL_4LFB_028
HL_37824.8
HL_8R3V_1011/A1/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_5J7L_028
HL_02887.3
HL_8R3V_1021/A1/1356:1366No text annotation
homologous
HL_4LFB_030
HL_06226.4
HL_8R3V_1031/A1/1449:1454UNCG
homologous
HL_5J7L_030
HL_34617.5
HL_8R3V_1041/A1/1515:1520GNRA
homologous
HL_6CZR_103
NA
HL_8R3V_1051/A2/12:22No text annotation
homologous
HL_5J7L_001
HL_89881.5
HL_8R3V_1061/A2/81:88No text annotation
HL_8R3V_1071/A2/158:163GNRA
homologous
HL_4LFB_003
HL_37824.8
HL_8R3V_1081/A2/186:191GNRA
homologous
HL_5J7L_004
HL_37824.8
HL_8R3V_1091/A2/203:214No text annotation
HL_8R3V_1101/A2/259:267GNRA related
homologous
HL_5J7L_006
HL_84299.4
HL_8R3V_1111/A2/296:301GNRA
homologous
HL_5J7L_007
HL_37824.8
HL_8R3V_1121/A2/320:333No text annotation
homologous
HL_5J7L_008
HL_81205.3
HL_8R3V_1131/A2/342:347UNCG
homologous
HL_5J7L_009
HL_34617.5
HL_8R3V_1141/A2/379:384GNRA
homologous
HL_6CZR_081
NA
HL_8R3V_1151/A2/419:424UNCG
homologous
HL_4LFB_011
HL_34617.5
HL_8R3V_1161/A2/462:470No text annotation
HL_8R3V_1551/A2/522:527GNRA variation
homologous
HL_5J7L_205
HL_37824.8
HL_8R3V_1181/A2/617:623GNRA-like with tWH
homologous
HL_4LFB_014
HL_10453.3
HL_8R3V_1191/A2/689:698No text annotation
homologous
HL_5J7L_015
HL_75293.5
HL_8R3V_1201/A2/726:731GNRA
homologous
HL_5J7L_016
HL_37824.8
HL_8R3V_1211/A2/786:796No text annotation
homologous
HL_5J7L_017
HL_75293.5
HL_8R3V_1221/A2/840:846Externally structured
geometric
HL_5TBW_022
NA
HL_8R3V_1231/A2/862:867GNRA
homologous
HL_5J7L_019
HL_37824.8
HL_8R3V_1241/A2/897:902GNRA
homologous
HL_4LFB_020
HL_37824.8
HL_8R3V_1251/A2/963:972No text annotation
homologous
HL_5J7L_021
HL_50779.4
HL_8R3V_1261/A2/1012:1017GNRA
homologous
HL_4LFB_022
HL_37824.8
HL_8R3V_1271/A2/1028:1033No text annotation
HL_8R3V_1281/A2/1076:1081GNRA
homologous
HL_5J7L_023
HL_37824.8
HL_8R3V_1291/A2/1089:1096T-loop related
homologous
HL_4LFB_025
HL_77436.5
HL_8R3V_1301/A2/1134:1140No text annotation
homologous
HL_4LFB_026
HL_87954.2
HL_8R3V_1311/A2/1165:1171GNRA
homologous
HL_4LFB_027
HL_37824.8
HL_8R3V_1321/A2/1265:1270GNRA
homologous
HL_4LFB_028
HL_37824.8
HL_8R3V_1331/A2/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_02887.3
HL_8R3V_1341/A2/1356:1366No text annotation
homologous
HL_4LFB_030
HL_06226.4
HL_8R3V_1351/A2/1449:1454UNCG
homologous
HL_4LFB_031
HL_34617.5
HL_8R3V_1361/A2/1515:1520GNRA
homologous
HL_6CZR_103
NA
HL_8R3V_1371/W/13:22tRNA D-loop
homologous
HL_1QF6_001
HL_20811.4
HL_8R3V_1381/W/31:39tRNA anticodon loop
homologous
HL_6UFM_002
HL_06059.7
HL_8R3V_1391/W/53:61T-loop with 2 stacked bulged bases
homologous
HL_5L4O_003
NA
HL_8R3V_1561/W1/31:39tRNA anticodon loop
homologous
HL_5J8B_118
NA
HL_8R3V_1421/X2/13:23No text annotation
homologous
HL_5HR7_004
HL_78347.4
HL_8R3V_1431/X2/32:40tRNA anticodon loop
homologous
HL_1U0B_002
HL_06059.7
HL_8R3V_1441/X2/54:62T-loop with 2 stacked bulged bases
homologous
HL_1SER_002
NA
HL_8R3V_1461/Y1/30:40No text annotation
homologous
HL_4WZD_209
NA
HL_8R3V_1471/Y2/13:22tRNA D-loop
homologous
HL_1QF6_001
HL_20811.4
HL_8R3V_1481/Y2/31:39tRNA anticodon loop
homologous
HL_6UFG_007
HL_06059.7
HL_8R3V_1491/Y2/53:61T-loop with 2 stacked bulged bases
homologous
HL_6CFJ_108
HL_28252.9

Problematic loops

#loop idProblemSequence
HL_8R3V_018No text annotation
HL_8R3V_027No text annotation
HL_8R3V_056No text annotation
HL_8R3V_073No text annotation
HL_8R3V_074No text annotation
HL_8R3V_085No text annotation
HL_8R3V_154No text annotation
HL_8R3V_117No text annotation
HL_8R3V_140tRNA D-loop
HL_8R3V_141No text annotation
HL_8R3V_145tRNA D-loop

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8R3V_0011/72/24:30,
1/72/510:516
Triple sheared with non-canonical cWW
homologous
IL_5J7L_245
IL_04021.2
IL_8R3V_0021/72/36:37,
1/72/442:444
Single bulged A
homologous
IL_7RQB_002
NA
IL_8R3V_0031/72/43:44,
1/72/434:436
Minor groove platform
homologous
IL_5J7L_247
IL_51454.3
IL_8R3V_0041/72/81:85,
1/72/97:105
No text annotation
homologous
IL_5J7L_248
IL_37015.1
IL_8R3V_0051/72/183:184,
1/72/212:214
Single stack bend
homologous
IL_5J7L_249
IL_90729.1
IL_8R3V_0061/72/188:194,
1/72/201:208
8x7 Sarcin-Ricin; G-bulge
geometric
IL_7RQB_006
NA
IL_8R3V_0071/72/239:245,
1/72/253:258
7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
IL_26307.2
IL_8R3V_0081/72/269:271,
1/72/366:370
No text annotation
homologous
IL_5J7L_252
IL_47972.1
IL_8R3V_0091/72/274:281,
1/72/359:363
No text annotation
homologous
IL_5J7L_253
IL_77870.1
IL_8R3V_0111/72/293:295,
1/72/343:347
No text annotation
homologous
IL_5J7L_254
IL_69440.3
IL_8R3V_0121/72/481:484,
1/72/496:509
No text annotation
homologous
IL_5J7L_255
IL_81516.2
IL_8R3V_0131/72/536:539,
1/72/554:557
Double sheared
homologous
IL_5J7L_256
IL_09705.15
IL_8R3V_2851/72/564:566,
1/72/575:577
Isolated non-canonical cWW pair
homologous
IL_5J7L_257
IL_07785.1
IL_8R3V_0141/72/606:610,
1/72/618:622
AAA cross-strand stack
homologous
IL_5J7L_258
IL_66798.2
IL_8R3V_0151/72/672:674,
1/72/806:808
No text annotation
homologous
IL_7RQB_017
NA
IL_8R3V_0161/72/674:678,
1/72/799:806
tHW-tHW cross-strand stack
geometric
IL_7RQB_018
NA
IL_8R3V_0171/72/697:698,
1/72/763:765
Single bulged A
geometric
IL_5J7L_261
IL_31462.7
IL_8R3V_0181/72/702:703,
1/72/728:730
Single bulged G
geometric
IL_4V9F_026
IL_00225.14
IL_8R3V_0191/72/703:707,
1/72/724:728
Triple sheared
homologous
IL_4WF9_024
IL_50730.2
IL_8R3V_0201/72/738:740,
1/72/757:758
Major groove platform
homologous
IL_5J7L_264
IL_48076.6
IL_8R3V_0211/72/775:777,
1/72/787:791
Multiple bulged bases
geometric
IL_5J7L_265
IL_06549.2
IL_8R3V_0221/72/844:847,
1/72/933:934
90 degree turn
homologous
IL_5J7L_267
IL_90729.1
IL_8R3V_2571/72/844:848,
1/72/930:934
No text annotation
homologous
IL_5J7L_399
IL_96236.1
IL_8R3V_0231/72/847:848,
1/72/930:933
Stack outside cWW
geometric
IL_5J7L_268
IL_56987.1
IL_8R3V_0241/72/850:851,
1/72/926:928
Single stack bend
homologous
IL_5J7L_269
IL_26793.1
IL_8R3V_0251/72/856:862,
1/72/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5J7L_270
IL_29198.2
IL_8R3V_0261/72/862:863,
1/72/913:915
Single bulged G
geometric
IL_5J7L_271
IL_00225.14
IL_8R3V_0271/72/864:868,
1/72/909:912
C-loop with bulged stacked A's
homologous
IL_5J7L_272
IL_26222.2
IL_8R3V_0281/72/870:872,
1/72/905:907
Isolated non-canonical cWW pair
homologous
IL_5J7L_273
IL_28037.2
IL_8R3V_0291/72/875:879,
1/72/898:902
Double sheared with non-canonical cWW
homologous
IL_5J7L_274
IL_17948.2
IL_8R3V_0301/72/880:881,
1/72/895:897
No text annotation
IL_8R3V_0311/72/994:996,
1/72/1159:1160
Single bulged C
homologous
IL_7RQB_035
NA
IL_8R3V_0321/72/998:1002,
1/72/1153:1157
UAA/GAN
homologous
IL_4WF9_036
IL_38507.2
IL_8R3V_0331/72/1004:1011,
1/72/1150:1151
SSU/LSU pseudoknot
geometric
IL_5J7L_278
IL_41203.4
IL_8R3V_0341/72/1011:1013,
1/72/1149:1150
Single bulged U
homologous
IL_5J7L_279
IL_89505.4
IL_8R3V_0351/72/1018:1024,
1/72/1140:1144
Kink-turn related
geometric
IL_4WF9_039
IL_57188.5
IL_8R3V_0361/72/1024:1030,
1/72/1124:1140
No text annotation
geometric
IL_5J7L_281
IL_50715.3
IL_8R3V_0371/72/1031:1034,
1/72/1121:1123
Isolated non-canonical cWW pair
homologous
IL_5J7L_282
IL_57744.1
IL_8R3V_0381/72/1038:1041,
1/72/1114:1117
Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
IL_85033.2
IL_8R3V_0391/72/1043:1051,
1/72/1108:1112
Kink-turn
homologous
IL_5J7L_284
IL_99692.2
IL_8R3V_0401/72/1059:1062,
1/72/1076:1079
No text annotation
homologous
IL_6PRV_001
IL_92446.2
IL_8R3V_0411/72/1087:1091,
1/72/1100:1102
Major groove platform with extra cWW
geometric
IL_5D8H_003
IL_51387.3
IL_8R3V_0431/72/1196:1198,
1/72/1247:1250
Isolated cWS basepair
homologous
IL_4WF9_044
IL_42997.3
IL_8R3V_0441/72/1202:1206,
1/72/1240:1243
No text annotation
homologous
IL_5J7L_287
IL_91920.1
IL_8R3V_0451/72/1208:1215,
1/72/1234:1238
Kink-turn
homologous
IL_5J7L_288
IL_70923.9
IL_8R3V_0461/72/1262:1269,
1/72/2011:2017
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
IL_04346.10
IL_8R3V_0471/72/1310:1313,
1/72/1603:1604
Major groove platform; stack outside cWW
homologous
IL_5J7L_290
IL_50694.7
IL_8R3V_0481/72/1319:1323,
1/72/1331:1333
C-loop
homologous
IL_5J7L_291
IL_63596.11
IL_8R3V_0491/72/1351:1355,
1/72/1376:1380
UAA/GAN
homologous
IL_5J7L_292
IL_89021.2
IL_8R3V_0501/72/1357:1361,
1/72/1370:1374
tSH-tHW-tHS
homologous
IL_5J7L_293
IL_17136.7
IL_8R3V_0511/72/1415:1416,
1/72/1582:1587
No text annotation
homologous
IL_5J7L_294
IL_87211.1
IL_8R3V_0521/72/1417:1421,
1/72/1577:1581
UAA/GAN
homologous
IL_5J7L_295
IL_38507.2
IL_8R3V_0531/72/1432:1435,
1/72/1557:1561
Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
IL_58112.2
IL_8R3V_0541/72/1437:1440,
1/72/1551:1555
tSH-tHW
homologous
IL_5J7L_297
IL_99646.2
IL_8R3V_0551/72/1450:1451,
1/72/1459:1461
Single bulged U
homologous
IL_5J7L_298
IL_89505.4
IL_8R3V_0561/72/1468:1471,
1/72/1520:1524
No text annotation
homologous
IL_5J7L_299
IL_68574.4
IL_8R3V_0571/72/1474:1478,
1/72/1513:1517
tSH-tHW-tHS
homologous
IL_5J7L_300
IL_38862.4
IL_8R3V_0581/72/1481:1482,
1/72/1507:1510
180 degree turn
homologous
IL_5J7L_301
IL_00881.1
IL_8R3V_0591/72/1489:1491,
1/72/1499:1500
Single bulged A
homologous
IL_5J7L_302
IL_31462.7
IL_8R3V_0601/72/1526:1529,
1/72/1542:1546
UAA/GAN variation
homologous
IL_5J7L_303
IL_23774.1
IL_8R3V_0611/72/1651:1656,
1/72/2004:2006
No text annotation
homologous
IL_5J7L_304
IL_12566.4
IL_8R3V_0621/72/1663:1665,
1/72/1995:1997
Isolated tWW turn
homologous
IL_5J7L_305
IL_67095.2
IL_8R3V_0631/72/1666:1669,
1/72/1993:1994
Major groove platform; stack outside cWW
homologous
IL_7RQB_066
NA
IL_8R3V_2591/72/1666:1674,
1/72/1990:1994
No text annotation
homologous
IL_4WF9_117
IL_22854.4
IL_8R3V_0641/72/1669:1674,
1/72/1990:1993
Intercalated tWH
geometric
IL_5J7L_307
IL_76758.2
IL_8R3V_0651/72/1686:1691,
1/72/1696:1702
tSH-tSH-tHH-tHS
homologous
IL_7RQB_068
NA
IL_8R3V_0661/72/1712:1718,
1/72/1742:1746
6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
IL_88269.4
IL_8R3V_0671/72/1720:1724,
1/72/1736:1740
Triple sheared
homologous
IL_5J7L_310
IL_50730.2
IL_8R3V_0681/72/1727:1728,
1/72/1731:1733
Single bulged C
homologous
IL_5J7L_311
IL_61258.15
IL_8R3V_0691/72/1770:1771,
1/72/1980:1982
Single bulged A
homologous
IL_7A0S_064
IL_31462.7
IL_8R3V_0701/72/1798:1804,
1/72/1813:1821
Kink-turn related
homologous
IL_5J7L_313
IL_17069.5
IL_8R3V_0711/72/1837:1840,
1/72/1902:1903
Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
IL_95583.2
IL_8R3V_0721/72/1841:1842,
1/72/1898:1901
Major groove intercalation
homologous
IL_5J7L_315
IL_82107.5
IL_8R3V_0731/72/1846:1849,
1/72/1893:1894
Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
IL_68140.4
IL_8R3V_2601/72/1851:1860,
1/72/1882:1891
No text annotation
homologous
IL_5J7L_387
IL_61249.1
IL_8R3V_0741/72/1864:1867,
1/72/1874:1878
UAA/GAN related
homologous
IL_5J7L_317
IL_77691.5
IL_8R3V_0751/72/1933:1934,
1/72/1964:1967
Bulged stacked bases
geometric
IL_5J7L_318
IL_22551.4
IL_8R3V_0761/72/1934:1945,
1/72/1961:1964
No text annotation
homologous
IL_4WF9_077
IL_42218.2
IL_8R3V_0771/72/2050:2052,
1/72/2617:2618
Major groove platform
homologous
IL_5J7L_320
IL_48076.6
IL_8R3V_0781/72/2054:2056,
1/72/2612:2615
No text annotation
homologous
IL_5J7L_321
IL_83389.2
IL_8R3V_2611/72/2067:2069,
1/72/2442:2443
Single bulged U
homologous
IL_4WF9_080
IL_89505.4
IL_8R3V_0811/72/2070:2071,
1/72/2438:2441
Minor groove platform
geometric
IL_7RQB_081
NA
IL_8R3V_0821/72/2081:2083,
1/72/2236:2239
Isolated tHS basepair with bulges
homologous
IL_5J7L_325
IL_85599.2
IL_8R3V_0831/72/2085:2087,
1/72/2232:2234
Isolated non-canonical cWW pair
homologous
IL_5J7L_326
IL_28037.2
IL_8R3V_0841/72/2103:2105,
1/72/2184:2186
Isolated non-canonical cWW pair
geometric
IL_1MZP_001
IL_28037.2
IL_8R3V_0851/72/2107:2110,
1/72/2179:2182
Tandem non-canonical cWW pairs
geometric
IL_4K27_002
IL_77658.1
IL_8R3V_0861/72/2110:2120,
1/72/2178:2179
No text annotation
IL_8R3V_2861/72/2124:2137,
1/72/2154:2174
No text annotation
IL_8R3V_0881/72/2202:2204,
1/72/2220:2221
Single bulged U
homologous
IL_5J7L_331
IL_89505.4
IL_8R3V_0891/72/2350:2353,
1/72/2364:2367
Double sheared
homologous
IL_5J7L_333
IL_09705.15
IL_8R3V_0911/72/2401:2403,
1/72/2414:2415
No text annotation
IL_8R3V_2631/72/2453:2454,
1/72/2498:2500
Single stack bend
homologous
IL_5J7L_391
IL_26793.1
IL_8R3V_2641/72/2454:2455,
1/72/2496:2498
Major groove platform
homologous
IL_9DFE_092
IL_48076.6
IL_8R3V_2651/72/2457:2459,
1/72/2493:2494
Major groove platform
homologous
IL_5J7L_393
IL_07039.3
IL_8R3V_0941/72/2459:2461,
1/72/2489:2493
Major groove minor groove platform with extra cWW
homologous
IL_4WF9_092
IL_51387.3
IL_8R3V_0951/72/2466:2470,
1/72/2480:2484
Double sheared with non-canonical cWW
homologous
IL_5J7L_338
IL_17948.2
IL_8R3V_2661/72/2507:2508,
1/72/2580:2582
Major groove platform
homologous
IL_5J7L_394
IL_07039.3
IL_8R3V_0971/72/2510:2512,
1/72/2574:2578
Isolated non-canonical cWW with bulges
geometric
IL_4WF9_095
IL_07785.1
IL_8R3V_0981/72/2512:2513,
1/72/2571:2574
No text annotation
homologous
IL_5J7L_341
IL_42626.2
IL_8R3V_0991/72/2522:2523,
1/72/2540:2543
Major groove platform with intercalation
homologous
IL_5J7L_342
IL_02555.1
IL_8R3V_1011/72/2591:2592,
1/72/2601:2603
Single bulged A
homologous
IL_7RQB_101
NA
IL_8R3V_1021/72/2636:2640,
1/72/2774:2782
tSH-tHS-tHW
homologous
IL_5J7L_345
IL_04638.3
IL_8R3V_1031/72/2652:2658,
1/72/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_5J7L_346
IL_16458.4
IL_8R3V_1041/72/2680:2684,
1/72/2725:2727
C-loop
homologous
IL_7RQB_104
NA
IL_8R3V_1051/72/2687:2691,
1/72/2718:2722
UAA/GAN related, with intercalation
homologous
IL_4WF9_102
IL_23774.1
IL_8R3V_1061/72/2695:2696,
1/72/2711:2714
Multiple bulged bases
homologous
IL_5J7L_349
IL_42626.2
IL_8R3V_1071/72/2737:2742,
1/72/2762:2767
UAA/GAN with extra cWW
homologous
IL_5J7L_350
IL_49767.8
IL_8R3V_1081/72/2806:2811,
1/72/2889:2892
No text annotation
homologous
IL_5J7L_351
IL_29471.1
IL_8R3V_1091/72/2838:2839,
1/72/2878:2880
Major groove intercalation
homologous
IL_5J7L_352
IL_66635.5
IL_8R3V_1101/72/2843:2846,
1/72/2870:2874
Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
IL_64231.5
IL_8R3V_1111/72/2847:2852,
1/72/2865:2869
tHS double platform
homologous
IL_5J7L_354
IL_70411.2
IL_8R3V_1121/82/17:18,
1/82/65:67
Major groove intercalation
homologous
IL_5J7L_355
IL_31462.7
IL_8R3V_1131/82/23:28,
1/82/56:60
No text annotation
homologous
IL_5J7L_356
IL_18472.4
IL_8R3V_1141/82/30:31,
1/82/51:54
Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_357
IL_68140.4
IL_8R3V_1151/82/34:38,
1/82/44:48
Symmetric double minor groove platform
geometric
IL_5J7L_358
IL_58103.11
IL_8R3V_1161/82/71:79,
1/82/97:105
Bacterial 5S Loop E
homologous
IL_5J7L_359
IL_56455.6
IL_8R3V_1171/A1/30:32,
1/A1/552:553
Single bulged G
homologous
IL_5J7L_001
IL_00225.14
IL_8R3V_1181/A1/44:45,
1/A1/396:398
Single bulged A
homologous
IL_5J7L_002
IL_31462.7
IL_8R3V_1191/A1/47:52,
1/A1/359:361
No text annotation
homologous
IL_5J7L_003
IL_14177.2
IL_8R3V_1201/A1/54:56,
1/A1/356:357
Minor groove platform
homologous
IL_5J7L_004
IL_51454.3
IL_8R3V_1211/A1/63:66,
1/A1/103:104
Multiple bulged bases
homologous
IL_5J7L_005
IL_82107.5
IL_8R3V_1221/A1/67:69,
1/A1/99:102
Minor groove platform with extra cWW
homologous
IL_5J7L_006
IL_90351.1
IL_8R3V_1231/A1/70:73,
1/A1/97:98
Minor groove platform
homologous
IL_5J7L_007
IL_15052.4
IL_8R3V_1241/A1/75:77,
1/A1/92:95
Single bulged G, near cWW
homologous
IL_5J7L_008
NA
IL_8R3V_1251/A1/128:131,
1/A1/231:233
Isolated non-canonical cWW pair
homologous
IL_5J7L_009
IL_57744.1
IL_8R3V_1261/A1/132:136,
1/A1/227:230
No text annotation
homologous
IL_4LFB_008
IL_64231.5
IL_8R3V_1271/A1/144:146,
1/A1/176:178
Isolated cWH basepair
homologous
IL_5J7L_011
IL_10167.6
IL_8R3V_1281/A1/147:153,
1/A1/168:175
tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
IL_80604.6
IL_8R3V_1291/A1/242:247,
1/A1/277:284
Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
IL_46174.3
IL_8R3V_1301/A1/249:252,
1/A1/274:275
No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_8R3V_1311/A1/292:293,
1/A1/304:308
C-loop
homologous
IL_4LFB_013
IL_03109.3
IL_8R3V_1321/A1/367:369,
1/A1/392:393
Single bulged U
homologous
IL_4LFB_014
IL_89505.4
IL_8R3V_1331/A1/371:375,
1/A1/389:390
C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_8R3V_2871/A1/375:376,
1/A1/387:389
Single bulged G
homologous
IL_5J7L_019
IL_00225.14
IL_8R3V_1351/A1/409:416,
1/A1/427:433
No text annotation
geometric
IL_4LFB_017
IL_28026.3
IL_8R3V_1371/A1/440:442,
1/A1/492:497
No text annotation
homologous
IL_5J7L_021
IL_33323.1
IL_8R3V_1381/A1/446:450,
1/A1/483:488
tSH-tHW-tWW
homologous
IL_5J7L_022
IL_88269.4
IL_8R3V_1391/A1/450:455,
1/A1/477:483
No text annotation
geometric
IL_5J7L_023
IL_70801.1
IL_8R3V_1401/A1/504:511,
1/A1/540:541
SSU/LSU pseudoknot
homologous
IL_5J7L_024
IL_41203.4
IL_8R3V_1411/A1/515:521,
1/A1/528:536
Kink-turn related
geometric
IL_4V88_415
NA
IL_8R3V_1421/A1/569:575,
1/A1/880:881
No text annotation
homologous
IL_5J7L_026
IL_38186.6
IL_8R3V_1431/A1/580:584,
1/A1/757:761
tSH-tHW-tHS
homologous
IL_5J7L_027
IL_17136.7
IL_8R3V_1451/A1/594:596,
1/A1/644:645
Major groove platform
homologous
IL_5J7L_028
IL_48076.6
IL_8R3V_1461/A1/597:598,
1/A1/640:643
Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_029
IL_68140.4
IL_8R3V_1471/A1/605:612,
1/A1/628:633
No text annotation
homologous
IL_5J7L_030
IL_78349.3
IL_8R3V_1481/A1/654:655,
1/A1/751:754
Major groove platform; stack outside cWW
homologous
IL_5J7L_031
IL_50694.7
IL_8R3V_1491/A1/658:659,
1/A1/746:748
Single stack bend
homologous
IL_5J7L_032
IL_26793.1
IL_8R3V_1501/A1/662:666,
1/A1/740:743
Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
IL_85033.2
IL_8R3V_1511/A1/673:678,
1/A1/712:717
No text annotation
homologous
IL_5J7L_034
NA
IL_8R3V_1531/A1/684:688,
1/A1/699:706
Kink-turn
geometric
IL_5J7L_035
IL_01488.3
IL_8R3V_1541/A1/774:779,
1/A1/803:805
Other IL
geometric
IL_4V88_435
NA
IL_8R3V_1551/A1/779:783,
1/A1/799:803
tSH-tHW-tHS
geometric
IL_4LFB_033
IL_17136.7
IL_8R3V_2881/A1/887:894,
1/A1/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
IL_41756.4
IL_8R3V_1581/A1/922:923,
1/A1/1393:1395
Single bulged A
homologous
IL_4LFB_035
IL_31462.7
IL_8R3V_2691/A1/925:927,
1/A1/1390:1391
Single bulged G
homologous
IL_4LFB_036
IL_00225.14
IL_8R3V_1601/A1/933:935,
1/A1/1380:1384
Minor groove platform
homologous
IL_5J7L_041
IL_47078.3
IL_8R3V_1611/A1/953:954,
1/A1/1226:1228
No text annotation
homologous
IL_6CZR_150
NA
IL_8R3V_1621/A1/993:997,
1/A1/1043:1045
No text annotation
geometric
IL_8C3A_432
NA
IL_8R3V_2711/A1/993:999,
1/A1/1041:1045
No text annotation
IL_8R3V_1631/A1/997:999,
1/A1/1041:1043
Isolated non-canonical cWW pair
geometric
IL_5J7L_259
IL_87907.2
IL_8R3V_2721/A1/1003:1007,
1/A1/1022:1037
No text annotation
IL_8R3V_1641/A1/1048:1050,
1/A1/1208:1209
Single bulged U
geometric
IL_5J7L_046
IL_89505.4
IL_8R3V_1661/A1/1052:1056,
1/A1/1204:1206
Isolated cWS basepair
geometric
IL_4LFB_044
IL_76319.5
IL_8R3V_2891/A1/1057:1058,
1/A1/1199:1203
Minor groove platform
homologous
IL_5J7L_048
IL_95583.2
IL_8R3V_1681/A1/1060:1061,
1/A1/1195:1197
Single bulged A
geometric
IL_5J7L_049
IL_31462.7
IL_8R3V_1691/A1/1061:1063,
1/A1/1193:1195
Isolated non-canonical cWW pair
homologous
IL_4LFB_047
IL_28037.2
IL_8R3V_1701/A1/1122:1128,
1/A1/1144:1151
No text annotation
IL_8R3V_1711/A1/1129:1132,
1/A1/1142:1143
Minor groove platform
homologous
IL_5J7L_052
IL_15052.4
IL_8R3V_1721/A1/1158:1161,
1/A1/1175:1181
No text annotation
homologous
IL_5J7L_053
IL_42032.1
IL_8R3V_1741/A1/1247:1253,
1/A1/1284:1290
No text annotation
homologous
IL_5J7L_054
IL_09129.2
IL_8R3V_1751/A1/1255:1258,
1/A1/1277:1282
180 degree turn
homologous
IL_5J7L_055
IL_11344.2
IL_8R3V_1761/A1/1259:1263,
1/A1/1272:1276
Double sheared with non-canonical cWW
homologous
IL_5J7L_056
IL_17948.2
IL_8R3V_1771/A1/1303:1308,
1/A1/1329:1334
No text annotation
homologous
IL_4LFB_055
IL_85536.2
IL_8R3V_1781/A1/1399:1401,
1/A1/1501:1504
No text annotation
homologous
IL_5J7L_058
IL_61438.4
IL_8R3V_1791/A1/1401:1404,
1/A1/1497:1501
No text annotation
geometric
IL_4V88_464
NA
IL_8R3V_2741/A1/1405:1407,
1/A1/1494:1496
Isolated non-canonical cWW pair
homologous
IL_5J7L_363
IL_87907.2
IL_8R3V_2751/A1/1407:1409,
1/A1/1491:1494
No text annotation
homologous
IL_4LFB_070
IL_31531.3
IL_8R3V_1811/A1/1412:1414,
1/A1/1486:1488
Isolated non-canonical cWW pair
homologous
IL_5J7L_061
IL_87907.2
IL_8R3V_2761/A1/1416:1419,
1/A1/1481:1484
Double sheared
homologous
IL_5J7L_062
IL_09705.15
IL_8R3V_1831/A1/1422:1425,
1/A1/1476:1478
No text annotation
geometric
IL_4N0T_004
IL_99358.1
IL_8R3V_2901/A1/1425:1426,
1/A1/1474:1476
Single stack bend
geometric
IL_7MLX_001
IL_90729.1
IL_8R3V_1851/A1/1430:1435,
1/A1/1466:1470
Triple sheared related
homologous
IL_5J7L_063
IL_80231.1
IL_8R3V_1861/A1/1437:1443,
1/A1/1459:1464
No text annotation
IL_8R3V_1871/A1/1443:1448,
1/A1/1455:1459
No text annotation
IL_8R3V_1881/A1/1536:1538,
1/V2/11:14
No text annotation
IL_8R3V_2771/A1/1536:1539,
1/V2/10:14
No text annotation
IL_8R3V_1901/A2/30:32,
1/A2/552:553
Single bulged G
geometric
IL_6CZR_113
NA
IL_8R3V_1911/A2/44:45,
1/A2/396:398
Single bulged A
homologous
IL_5J7L_002
IL_31462.7
IL_8R3V_1921/A2/47:52,
1/A2/359:361
No text annotation
homologous
IL_5J7L_003
IL_14177.2
IL_8R3V_1931/A2/54:56,
1/A2/356:357
Minor groove platform
homologous
IL_6CZR_116
NA
IL_8R3V_1941/A2/63:66,
1/A2/103:104
Multiple bulged bases
homologous
IL_5J7L_005
IL_82107.5
IL_8R3V_1951/A2/67:69,
1/A2/99:102
Minor groove platform with extra cWW
homologous
IL_5J7L_006
IL_90351.1
IL_8R3V_1961/A2/69:73,
1/A2/97:99
No text annotation
IL_8R3V_1981/A2/75:77,
1/A2/92:95
Isolated non-canonical cWW with bulges
geometric
IL_3KTW_002
NA
IL_8R3V_1991/A2/128:131,
1/A2/231:233
Isolated non-canonical cWW pair
homologous
IL_5J7L_009
IL_57744.1
IL_8R3V_2001/A2/132:136,
1/A2/227:230
No text annotation
homologous
IL_4LFB_008
IL_64231.5
IL_8R3V_2011/A2/144:146,
1/A2/176:178
Isolated cWH basepair
homologous
IL_5J7L_011
IL_10167.6
IL_8R3V_2021/A2/147:153,
1/A2/168:175
tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
IL_80604.6
IL_8R3V_2031/A2/242:247,
1/A2/277:284
Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
IL_46174.3
IL_8R3V_2911/A2/249:252,
1/A2/274:275
No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_8R3V_2051/A2/292:293,
1/A2/304:308
C-loop
homologous
IL_4LFB_013
IL_03109.3
IL_8R3V_2061/A2/367:369,
1/A2/392:393
Single bulged U
homologous
IL_4LFB_014
IL_89505.4
IL_8R3V_2071/A2/371:376,
1/A2/387:390
C-loop with extra cWW pair
geometric
IL_4V88_408
NA
IL_8R3V_2081/A2/409:418,
1/A2/425:433
No text annotation
IL_8R3V_2091/A2/446:450,
1/A2/483:488
tSH-tHW-tWW
geometric
IL_5J7L_022
IL_88269.4
IL_8R3V_2101/A2/450:455,
1/A2/477:483
No text annotation
homologous
IL_5J7L_023
IL_70801.1
IL_8R3V_2121/A2/504:511,
1/A2/540:541
SSU/LSU pseudoknot
homologous
IL_5J7L_024
IL_41203.4
IL_8R3V_2131/A2/515:521,
1/A2/528:536
Kink-turn related
geometric
IL_4V88_415
NA
IL_8R3V_2141/A2/569:575,
1/A2/880:881
No text annotation
homologous
IL_5J7L_026
IL_38186.6
IL_8R3V_2151/A2/580:584,
1/A2/757:761
tSH-tHW-tHS
homologous
IL_5J7L_027
IL_17136.7
IL_8R3V_2161/A2/594:596,
1/A2/644:645
Major groove platform
homologous
IL_5J7L_028
IL_48076.6
IL_8R3V_2171/A2/597:598,
1/A2/640:643
Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_68140.4
IL_8R3V_2181/A2/605:612,
1/A2/628:633
No text annotation
homologous
IL_5J7L_030
IL_78349.3
IL_8R3V_2191/A2/654:655,
1/A2/751:754
Major groove platform; stack outside cWW
homologous
IL_4LFB_027
IL_50694.7
IL_8R3V_2201/A2/658:659,
1/A2/746:748
Single stack bend
homologous
IL_5J7L_032
IL_26793.1
IL_8R3V_2211/A2/662:666,
1/A2/740:743
Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
IL_85033.2
IL_8R3V_2791/A2/673:677,
1/A2/713:717
Triple non-canonical cWW pairs
homologous
IL_5J7L_361
IL_49751.4
IL_8R3V_2231/A2/684:688,
1/A2/699:706
Kink-turn
homologous
IL_5J7L_035
IL_01488.3
IL_8R3V_2241/A2/774:778,
1/A2/804:805
Left turn
homologous
IL_5J7L_036
IL_29346.2
IL_8R3V_2251/A2/779:783,
1/A2/799:803
tSH-tHW-tHS
homologous
IL_5J7L_037
IL_17136.7
IL_8R3V_2271/A2/887:894,
1/A2/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
IL_41756.4
IL_8R3V_2281/A2/922:923,
1/A2/1393:1395
Single bulged A
homologous
IL_4LFB_035
IL_31462.7
IL_8R3V_2291/A2/925:927,
1/A2/1390:1391
Single bulged G
homologous
IL_5J7L_040
IL_00225.14
IL_8R3V_2301/A2/933:935,
1/A2/1380:1384
Minor groove platform
homologous
IL_5J7L_041
IL_47078.3
IL_8R3V_2311/A2/953:954,
1/A2/1226:1228
No text annotation
homologous
IL_6CZR_150
NA
IL_8R3V_2321/A2/993:997,
1/A2/1044:1045
Minor groove platform
homologous
IL_4LFB_039
IL_47078.3
IL_8R3V_2801/A2/997:999,
1/A2/1041:1044
No text annotation
geometric
IL_4N0T_004
IL_99358.1
IL_8R3V_2331/A2/998:999,
1/A2/1041:1043
Single stack bend
homologous
IL_5J7L_044
IL_26793.1
IL_8R3V_2921/A2/1003:1007,
1/A2/1022:1037
No text annotation
IL_8R3V_2341/A2/1048:1050,
1/A2/1208:1209
Single bulged U
geometric
IL_5J7L_046
IL_89505.4
IL_8R3V_2361/A2/1052:1056,
1/A2/1204:1206
Isolated cWS basepair
geometric
IL_4LFB_044
IL_76319.5
IL_8R3V_2371/A2/1057:1058,
1/A2/1199:1203
Minor groove platform
homologous
IL_4LFB_045
IL_95583.2
IL_8R3V_2381/A2/1060:1061,
1/A2/1195:1197
Single bulged A
geometric
IL_5J7L_049
IL_31462.7
IL_8R3V_2391/A2/1061:1063,
1/A2/1193:1195
Isolated non-canonical cWW pair
homologous
IL_4LFB_047
IL_28037.2
IL_8R3V_2401/A2/1124:1128,
1/A2/1144:1149
No text annotation
homologous
IL_5J7L_051
IL_06691.1
IL_8R3V_2411/A2/1129:1132,
1/A2/1142:1143
Minor groove platform
homologous
IL_5J7L_052
IL_15052.4
IL_8R3V_2421/A2/1158:1161,
1/A2/1175:1181
No text annotation
homologous
IL_5J7L_053
IL_42032.1
IL_8R3V_2431/A2/1247:1253,
1/A2/1284:1290
No text annotation
homologous
IL_5J7L_054
IL_09129.2
IL_8R3V_2441/A2/1255:1258,
1/A2/1277:1282
180 degree turn
homologous
IL_5J7L_055
IL_11344.2
IL_8R3V_2451/A2/1259:1263,
1/A2/1272:1276
Double sheared with non-canonical cWW
homologous
IL_5J7L_056
IL_17948.2
IL_8R3V_2461/A2/1303:1308,
1/A2/1329:1334
No text annotation
homologous
IL_4LFB_055
IL_85536.2
IL_8R3V_2471/A2/1399:1401,
1/A2/1501:1504
No text annotation
geometric
IL_5J7L_058
IL_61438.4
IL_8R3V_2481/A2/1401:1404,
1/A2/1497:1501
No text annotation
homologous
IL_5J7L_059
IL_65718.4
IL_8R3V_2821/A2/1405:1407,
1/A2/1494:1496
Isolated non-canonical cWW pair
homologous
IL_5J7L_363
IL_87907.2
IL_8R3V_2831/A2/1407:1409,
1/A2/1491:1494
No text annotation
homologous
IL_4LFB_070
IL_31531.3
IL_8R3V_2501/A2/1412:1414,
1/A2/1486:1488
Isolated non-canonical cWW pair
homologous
IL_5J7L_061
IL_87907.2
IL_8R3V_2511/A2/1416:1419,
1/A2/1481:1484
Double sheared
homologous
IL_5J7L_062
IL_09705.15
IL_8R3V_2521/A2/1430:1435,
1/A2/1466:1470
Triple sheared related
homologous
IL_5J7L_063
IL_80231.1
IL_8R3V_2531/A2/1440:1442,
1/A2/1460:1461
Single bulged A
homologous
IL_5J7L_064
IL_31462.7
IL_8R3V_2841/A2/1445:1448,
1/A2/1455:1457
No text annotation
homologous
IL_5J7L_065
IL_31531.3

Problematic loops

#loop idProblemSequence
IL_8R3V_010Isolated non-canonical cWW pair
IL_8R3V_042No text annotation
IL_8R3V_258Isolated non-canonical cWW pair
IL_8R3V_079Tandem non-canonical cWW pairs
IL_8R3V_080Isolated non-canonical cWW pair
IL_8R3V_262No text annotation
IL_8R3V_087No text annotation
IL_8R3V_090No text annotation
IL_8R3V_092No text annotation
IL_8R3V_093Major groove platform with extra pair
IL_8R3V_096No text annotation
IL_8R3V_100Tandem non-canonical cWW pairs
IL_8R3V_267No text annotation
IL_8R3V_134Single bulged G, near cWW
IL_8R3V_136Isolated non-canonical cWW pair
IL_8R3V_144Isolated non-canonical cWW pair
IL_8R3V_152Isolated non-canonical cWW pair
IL_8R3V_268No text annotation
IL_8R3V_156Tandem non-canonical cWW pairs
IL_8R3V_1579x7 Sarcin-Ricin with inserted C; G-bulge
IL_8R3V_159Isolated non-canonical cWW pair
IL_8R3V_270Isolated non-canonical cWW pair
IL_8R3V_165No text annotation
IL_8R3V_273No text annotation
IL_8R3V_167No text annotation
IL_8R3V_173Isolated non-canonical cWW pair
IL_8R3V_180No text annotation
IL_8R3V_182No text annotation
IL_8R3V_184No text annotation
IL_8R3V_189Isolated non-canonical cWW pair
IL_8R3V_197Isolated non-canonical cWW pair
IL_8R3V_204No text annotation
IL_8R3V_278No text annotation
IL_8R3V_211No text annotation
IL_8R3V_222No text annotation
IL_8R3V_226Isolated cWH basepair
IL_8R3V_281No text annotation
IL_8R3V_235No text annotation
IL_8R3V_249No text annotation
IL_8R3V_254No text annotation
IL_8R3V_255Isolated non-canonical cWW pair
IL_8R3V_256Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8R3V_0301/72/30:31,
1/72/474:481,
1/72/509:510
No text annotation
geometric
J3_5J7L_036
J3_60031.2
J3_8R3V_0311/72/30:31,
1/72/474:484,
1/72/496:510
No text annotation
homologous
J3_5J7L_066
J3_92134.2
J3_8R3V_0321/72/32:35,
1/72/445:461,
1/72/468:473
No text annotation
homologous
J3_5J7L_067
J3_30040.2
J3_8R3V_0331/72/56:57,
1/72/70:76,
1/72/110:114
No text annotation
homologous
J3_5J7L_037
J3_35667.2
J3_8R3V_0341/72/297:301,
1/72/316:325,
1/72/337:341
No text annotation
homologous
J3_5J7L_068
J3_46299.2
J3_8R3V_0011/72/683:689,
1/72/773:775,
1/72/791:794
No text annotation
homologous
J3_7RQB_004
NA
J3_8R3V_0021/72/698:700,
1/72/732:736,
1/72/760:763
No text annotation
homologous
J3_7RQB_005
NA
J3_8R3V_0031/72/1055:1058,
1/72/1080:1087,
1/72/1102:1104
No text annotation
J3_8R3V_0351/72/1055:1057,
1/72/1081:1090,
1/72/1101:1104
No text annotation
J3_8R3V_0041/72/1298:1303,
1/72/1625:1627,
1/72/1639:1642
No text annotation
homologous
J3_5J7L_041
J3_32852.6
J3_8R3V_0051/72/1306:1309,
1/72/1605:1611,
1/72/1620:1622
No text annotation
homologous
J3_7A0S_007
J3_71677.1
J3_8R3V_0361/72/1344:1349,
1/72/1382:1385,
1/72/1402:1403
No text annotation
homologous
J3_5J7L_043
J3_92705.1
J3_8R3V_0371/72/1424:1429,
1/72/1564:1565,
1/72/1568:1574
No text annotation
homologous
J3_5J7L_069
J3_34864.2
J3_8R3V_0061/72/2091:2093,
1/72/2196:2200,
1/72/2223:2228
Kink-turn 3-way junction
homologous
J3_5J7L_044
J3_89368.5
J3_8R3V_0381/72/2282:2284,
1/72/2384:2395,
1/72/2421:2427
No text annotation
homologous
J3_5J7L_070
J3_20992.1
J3_8R3V_0071/72/2295:2299,
1/72/2317:2323,
1/72/2332:2337
No text annotation
homologous
J3_5J7L_071
J3_44961.1
J3_8R3V_0081/72/2517:2520,
1/72/2545:2547,
1/72/2561:2567
No text annotation
homologous
J3_5J7L_046
J3_32601.5
J3_8R3V_0391/72/2789:2791,
1/72/2805:2806,
1/72/2892:2894
No text annotation
homologous
J3_5J7L_047
J3_30104.1
J3_8R3V_0091/72/2812:2815,
1/72/2831:2836,
1/72/2882:2888
No text annotation
homologous
J3_5J7L_048
J3_64069.1
J3_8R3V_0101/82/10:16,
1/82/68:70,
1/82/106:110
No text annotation
homologous
J3_5J7L_049
J3_89095.1
J3_8R3V_0401/A1/46:52,
1/A1/359:367,
1/A1/393:395
No text annotation
homologous
J3_5J7L_050
J3_46317.4
J3_8R3V_0551/A1/586:588,
1/A1/651:654,
1/A1/754:755
No text annotation
geometric
J3_5J7L_002
J3_56052.5
J3_8R3V_0561/A1/586:588,
1/A1/651:655,
1/A1/751:755
No text annotation
homologous
J3_5J7L_051
J3_17385.4
J3_8R3V_0111/A1/671:673,
1/A1/717:725,
1/A1/732:735
No text annotation
J3_8R3V_0121/A1/826:829,
1/A1/857:861,
1/A1/868:874
No text annotation
homologous
J3_5J7L_004
J3_85054.4
J3_8R3V_0131/A1/936:939,
1/A1/1344:1350,
1/A1/1372:1379
No text annotation
homologous
J3_4LFB_002
J3_25303.4
J3_8R3V_0141/A1/943:946,
1/A1/1235:1237,
1/A1/1337:1340
No text annotation
homologous
J3_5J7L_005
J3_52655.4
J3_8R3V_0151/A1/955:962,
1/A1/973:984,
1/A1/1221:1225
No text annotation
homologous
J3_5J7L_006
J3_83516.4
J3_8R3V_0161/A1/990:993,
1/A1/1045:1047,
1/A1/1210:1215
No text annotation
homologous
J3_4LFB_005
J3_82572.1
J3_8R3V_0171/A1/1003:1007,
1/A1/1022:1028,
1/A1/1033:1037
No text annotation
J3_8R3V_0181/A1/1063:1068,
1/A1/1107:1113,
1/A1/1187:1193
No text annotation
homologous
J3_5J7L_008
J3_08394.3
J3_8R3V_0431/A1/1073:1074,
1/A1/1083:1087,
1/A1/1098:1102
No text annotation
homologous
J3_6CZR_024
NA
J3_8R3V_0191/A1/1116:1118,
1/A1/1155:1158,
1/A1/1181:1184
No text annotation
homologous
J3_5J7L_010
J3_82365.4
J3_8R3V_0441/A1/1116:1118,
1/A1/1155:1161,
1/A1/1175:1184
No text annotation
homologous
J3_5J7L_054
J3_17791.2
J3_8R3V_0201/A1/1237:1241,
1/A1/1296:1303,
1/A1/1334:1337
No text annotation
homologous
J3_5J7L_011
J3_37047.6
J3_8R3V_0451/A1/1237:1243,
1/A1/1294:1303,
1/A1/1334:1337
No text annotation
J3_8R3V_0461/A2/46:47,
1/A2/361:367,
1/A2/393:395
No text annotation
geometric
J3_8C3A_082
NA
J3_8R3V_0471/A2/46:52,
1/A2/359:367,
1/A2/393:395
No text annotation
homologous
J3_4LFB_014
J3_46317.4
J3_8R3V_0481/A2/586:588,
1/A2/651:654,
1/A2/754:755
No text annotation
geometric
J3_5J7L_002
J3_56052.5
J3_8R3V_0491/A2/586:588,
1/A2/651:655,
1/A2/751:755
No text annotation
homologous
J3_5J7L_051
J3_17385.4
J3_8R3V_0501/A2/672:673,
1/A2/717:725,
1/A2/732:734
No text annotation
homologous
J3_5J7L_003
J3_11934.4
J3_8R3V_0211/A2/826:829,
1/A2/857:861,
1/A2/868:874
No text annotation
homologous
J3_5J7L_004
J3_85054.4
J3_8R3V_0221/A2/936:939,
1/A2/1344:1350,
1/A2/1372:1379
No text annotation
homologous
J3_4LFB_002
J3_25303.4
J3_8R3V_0231/A2/943:946,
1/A2/1235:1237,
1/A2/1337:1340
No text annotation
homologous
J3_4LFB_003
J3_52655.4
J3_8R3V_0241/A2/955:962,
1/A2/973:984,
1/A2/1221:1225
No text annotation
homologous
J3_5J7L_006
J3_83516.4
J3_8R3V_0251/A2/990:993,
1/A2/1045:1047,
1/A2/1210:1215
No text annotation
homologous
J3_5J7L_007
J3_82572.1
J3_8R3V_0511/A2/990:997,
1/A2/1044:1047,
1/A2/1210:1215
No text annotation
homologous
J3_5J7L_053
J3_76475.2
J3_8R3V_0261/A2/1003:1007,
1/A2/1022:1028,
1/A2/1033:1037
No text annotation
J3_8R3V_0271/A2/1063:1068,
1/A2/1107:1113,
1/A2/1187:1193
No text annotation
homologous
J3_5J7L_008
J3_08394.3
J3_8R3V_0571/A2/1073:1074,
1/A2/1083:1086,
1/A2/1099:1102
No text annotation
homologous
J3_4LFB_017
J3_79369.1
J3_8R3V_0281/A2/1116:1118,
1/A2/1155:1158,
1/A2/1181:1184
No text annotation
homologous
J3_5J7L_010
J3_82365.4
J3_8R3V_0581/A2/1116:1118,
1/A2/1155:1161,
1/A2/1175:1184
No text annotation
homologous
J3_4LFB_018
J3_17791.2
J3_8R3V_0291/A2/1237:1241,
1/A2/1296:1303,
1/A2/1334:1337
No text annotation
homologous
J3_5J7L_011
J3_37047.6
J4_8R3V_0011/72/268:269,
1/72/370:375,
1/72/399:406,
1/72/421:424
No text annotation
homologous
J4_5J7L_018
J4_45801.6
J4_8R3V_0021/72/297:301,
1/72/316:319,
1/72/323:325,
1/72/337:341
No text annotation
homologous
J4_5J7L_019
J4_71729.5
J4_8R3V_0031/72/601:604,
1/72/624:628,
1/72/635:638,
1/72/650:656
No text annotation
homologous
J4_5J7L_020
J4_60168.1
J4_8R3V_0041/72/1270:1276,
1/72/1294:1295,
1/72/1645:1648,
1/72/2009:2010
No text annotation
homologous
J4_5J7L_021
J4_64571.5
J4_8R3V_0051/72/1310:1314,
1/72/1338:1343,
1/72/1404:1405,
1/72/1597:1604
No text annotation
homologous
J4_5J7L_022
J4_69051.6
J4_8R3V_0061/72/1313:1314,
1/72/1338:1343,
1/72/1404:1405,
1/72/1597:1603
No text annotation
homologous
J4_5J7L_023
J4_10313.5
J4_8R3V_0071/72/1444:1445,
1/72/1466:1467,
1/72/1525:1526,
1/72/1546:1547
No text annotation
homologous
J4_5J7L_024
J4_24280.2
J4_8R3V_0081/72/1772:1776,
1/72/1788:1792,
1/72/1827:1830,
1/72/1975:1979
No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_8R3V_0091/72/1833:1835,
1/72/1905:1906,
1/72/1924:1933,
1/72/1967:1972
No text annotation
homologous
J4_9DFE_008
J4_93343.1
J4_8R3V_0101/72/2285:2289,
1/72/2343:2347,
1/72/2370:2372,
1/72/2381:2383
No text annotation
homologous
J4_5J7L_027
J4_04930.6
J4_8R3V_0111/72/2643:2646,
1/72/2674:2676,
1/72/2731:2735,
1/72/2769:2771
No text annotation
homologous
J4_5J7L_028
J4_77044.4
J4_8R3V_0121/A1/115:123,
1/A1/238:240,
1/A1/286:289,
1/A1/311:312
No text annotation
J4_8R3V_0131/A1/142:144,
1/A1/178:184,
1/A1/193:199,
1/A1/218:221
No text annotation
J4_8R3V_0141/A1/569:577,
1/A1/764:769,
1/A1/810:821,
1/A1/879:881
No text annotation
J4_8R3V_0211/A2/115:122,
1/A2/239:240,
1/A2/286:289,
1/A2/311:312
No text annotation
homologous
J4_5J7L_001
J4_35578.3
J4_8R3V_0161/A2/142:144,
1/A2/178:184,
1/A2/193:199,
1/A2/218:221
No text annotation
J4_8R3V_0171/A2/575:577,
1/A2/764:769,
1/A2/810:821,
1/A2/879:880
No text annotation
homologous
J4_5J7L_003
J4_61885.6
J4_8R3V_0181/W/7:10,
1/W/25:27,
1/W/43:49,
1/W/65:66
tRNA junction
homologous
J4_7EQJ_002
J4_70449.29
J4_8R3V_0191/X2/7:10,
1/X2/26:28,
1/X2/44:50,
1/X2/66:67
tRNA junction
homologous
J4_6CFJ_015
J4_70449.29
J4_8R3V_0201/Y2/7:10,
1/Y2/25:27,
1/Y2/43:49,
1/Y2/65:66
tRNA junction
homologous
J4_3TUP_001
J4_70449.29
J5_8R3V_0011/72/47:54,
1/72/116:121,
1/72/130:131,
1/72/148:150,
1/72/176:178
No text annotation
homologous
J5_5J7L_013
J5_01737.2
J5_8R3V_0021/72/531:533,
1/72/560:564,
1/72/577:579,
1/72/1261:1262,
1/72/2017:2018
No text annotation
homologous
J5_5J7L_014
J5_43153.5
J5_8R3V_0031/72/584:589,
1/72/668:671,
1/72/809:812,
1/72/1195:1196,
1/72/1250:1256
No text annotation
homologous
J5_5J7L_015
J5_74302.5
J5_8R3V_0041/72/1674:1682,
1/72/1706:1707,
1/72/1751:1752,
1/72/1756:1764,
1/72/1988:1990
No text annotation
homologous
J5_5J7L_016
J5_62523.6
J5_8R3V_0051/72/2057:2064,
1/72/2446:2453,
1/72/2500:2507,
1/72/2582:2588,
1/72/2606:2611
No text annotation
J5_8R3V_0061/72/2074:2077,
1/72/2243:2246,
1/72/2258:2259,
1/72/2281:2282,
1/72/2427:2435
No text annotation
homologous
J5_4WF9_007
J5_39529.1
J5_8R3V_0071/A1/36:39,
1/A1/403:406,
1/A1/436:440,
1/A1/497:500,
1/A1/545:548
No text annotation
homologous
J5_5J7L_001
J5_92941.1
J5_8R3V_0081/A1/36:39,
1/A1/403:406,
1/A1/436:442,
1/A1/492:500,
1/A1/545:548
No text annotation
homologous
J5_5J7L_002
J5_67416.1
J5_8R3V_0091/A1/58:61,
1/A1/106:113,
1/A1/314:316,
1/A1/337:339,
1/A1/350:354
No text annotation
homologous
J5_5J7L_003
J5_59910.6
J5_8R3V_0101/A2/36:39,
1/A2/403:406,
1/A2/436:442,
1/A2/492:500,
1/A2/545:548
No text annotation
J5_8R3V_0111/A2/58:61,
1/A2/106:113,
1/A2/314:316,
1/A2/337:339,
1/A2/350:354
No text annotation
homologous
J5_5J7L_003
J5_59910.6
J6_8R3V_0011/72/45:46,
1/72/179:183,
1/72/214:224,
1/72/231:235,
1/72/262:266,
1/72/426:433
No text annotation
J6_8R3V_0021/72/2074:2077,
1/72/2243:2246,
1/72/2258:2259,
1/72/2281:2284,
1/72/2384:2395,
1/72/2421:2435
No text annotation
J7_8R3V_0011/72/8:15,
1/72/525:531,
1/72/2018:2023,
1/72/2040:2043,
1/72/2625:2630,
1/72/2788:2789,
1/72/2894:2895
No text annotation
J7_8R3V_0021/72/817:822,
1/72/835:838,
1/72/940:946,
1/72/971:976,
1/72/987:991,
1/72/1163:1164,
1/72/1185:1190
No text annotation

Problematic loops

#loop idProblemSequence
J3_8R3V_041No text annotation
J3_8R3V_042No text annotation
J3_8R3V_052No text annotation
J3_8R3V_053No text annotation
J3_8R3V_054No text annotation
J4_8R3V_015No text annotation

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