HL_8R55_003

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R55_003 not in the Motif Atlas

Homologous match to HL_5UD5_003

Geometric discrepancy: 0.2791

The information below is about HL_5UD5_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8R55|1|7|G|53
8R55|1|7|U|54
8R55|1|7|U|55
8R55|1|7|C|56
8R55|1|7|G|57
8R55|1|7|A|58
8R55|1|7|U|59
8R55|1|7|U|60
8R55|1|7|C|61

Current chains

Chain 7

tRNA (73-MER)

Nearby chains

Chain X

Large subunit ribosomal RNA; LSU rRNA

Chain j

Large ribosomal subunit protein uL16