8R55 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8R55_001 | 1/7/13:22 | No text annotation | homologous HL_4LCK_001 NA | |
| HL_8R55_002 | 1/7/31:39 | tRNA anticodon loop | homologous HL_7U2I_104 NA | |
| HL_8R55_004 | 1/A/14:24 | No text annotation | homologous HL_5J7L_001 NA | |
| HL_8R55_007 | 1/A/192:197 | GNRA variation | geometric HL_1L9A_001 NA | |
| HL_8R55_009 | 1/A/267:275 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_8R55_010 | 1/A/304:309 | GNRA | homologous HL_5J7L_007 NA | |
| HL_8R55_011 | 1/A/328:341 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_8R55_014 | 1/A/427:432 | UNCG | homologous HL_4LFB_011 HL_61337.1 | |
| HL_8R55_016 | 1/A/531:536 | No text annotation | geometric HL_2ZNI_001 HL_75660.6 | |
| HL_8R55_017 | 1/A/626:632 | GNRA-like with tWH | homologous HL_5J7L_014 NA | |
| HL_8R55_018 | 1/A/698:707 | No text annotation | homologous HL_4LFB_015 HL_38491.1 | |
| HL_8R55_019 | 1/A/735:740 | GNRA | homologous HL_4LFB_016 HL_34789.1 | |
| HL_8R55_020 | 1/A/795:805 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_8R55_022 | 1/A/872:877 | GNRA | homologous HL_4LFB_019 HL_34789.1 | |
| HL_8R55_023 | 1/A/907:912 | GNRA | homologous HL_4LFB_020 HL_34789.1 | |
| HL_8R55_024 | 1/A/973:982 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_8R55_027 | 1/A/1086:1091 | GNRA | homologous HL_4LFB_024 HL_34789.1 | |
| HL_8R55_028 | 1/A/1099:1106 | T-loop related | homologous HL_5J7L_024 NA | |
| HL_8R55_031 | 1/A/1274:1279 | GNRA | homologous HL_5J7L_027 NA | |
| HL_8R55_032 | 1/A/1323:1332 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_8R55_033 | 1/A/1365:1375 | No text annotation | homologous HL_5J7L_029 NA | |
| HL_8R55_035 | 1/A/1525:1530 | GNRA | geometric HL_5J7L_164 NA | |
| HL_8R55_036 | 1/U/13:22 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_8R55_037 | 1/U/31:39 | tRNA anticodon loop | homologous HL_6UFM_002 NA | |
| HL_8R55_038 | 1/U/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4V8N_145 NA | |
| HL_8R55_039 | 1/X/67:74 | No text annotation | geometric HL_4WF9_001 HL_08550.1 | |
| HL_8R55_040 | 1/X/87:95 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_8R55_041 | 1/X/122:127 | No text annotation | homologous HL_4WF9_003 HL_75660.6 | |
| HL_8R55_042 | 1/X/136:143 | GNRA wlth tandem sheared | homologous HL_4WF9_004 HL_98423.1 | |
| HL_8R55_043 | 1/X/159:169 | No text annotation | ||
| HL_8R55_044 | 1/X/197:204 | No text annotation | homologous HL_4WF9_006 HL_48677.1 | |
| HL_8R55_045 | 1/X/228:233 | No text annotation | homologous HL_7A0S_007 HL_51020.1 | |
| HL_8R55_046 | 1/X/249:255 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_8R55_048 | 1/X/349:356 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 NA | |
| HL_8R55_049 | 1/X/363:367 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_8R55_050 | 1/X/371:379 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_8R55_051 | 1/X/429:439 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_8R55_052 | 1/X/457:464 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.4 | |
| HL_8R55_053 | 1/X/509:514 | GNRA | homologous HL_7RQB_015 NA | |
| HL_8R55_054 | 1/X/534:539 | GNRA | homologous HL_4WF9_016 HL_34789.1 | |
| HL_8R55_055 | 1/X/588:595 | No text annotation | homologous HL_4WF9_017 HL_50318.1 | |
| HL_8R55_056 | 1/X/610:619 | T-loop with 2 stacked bulged bases | geometric HL_4WF9_018 HL_33597.1 | |
| HL_8R55_057 | 1/X/656:662 | GNRA | geometric HL_5J7L_026 NA | |
| HL_8R55_058 | 1/X/675:680 | GNRA | homologous HL_4WF9_020 HL_34789.1 | |
| HL_8R55_059 | 1/X/687:693 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_8R55_060 | 1/X/759:766 | GNRA wlth tandem sheared | homologous HL_5J7L_154 NA | |
| HL_8R55_061 | 1/X/791:800 | No text annotation | homologous HL_4WF9_023 HL_50204.1 | |
| HL_8R55_062 | 1/X/826:832 | UNCG variation | homologous HL_7A0S_023 HL_51020.1 | |
| HL_8R55_063 | 1/X/873:878 | No text annotation | homologous HL_5J7L_157 NA | |
| HL_8R55_065 | 1/X/1001:1008 | GNRA | homologous HL_4WF9_027 HL_34789.1 | |
| HL_8R55_066 | 1/X/1024:1031 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_8R55_070 | 1/X/1262:1267 | GNRA | homologous HL_7A0S_031 HL_34789.1 | |
| HL_8R55_071 | 1/X/1320:1328 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_032 HL_33597.1 | |
| HL_8R55_072 | 1/X/1363:1369 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_49081.1 | |
| HL_8R55_073 | 1/X/1402:1407 | GNRA | homologous HL_5J7L_167 NA | |
| HL_8R55_074 | 1/X/1428:1437 | No text annotation | homologous HL_4WF9_035 HL_77449.1 | |
| HL_8R55_111 | 1/X/1497:1508 | UNCG variation | geometric HL_5J7L_200 NA | |
| HL_8R55_075 | 1/X/1498:1506 | Mini UNCG with extended bulge | homologous HL_5J7L_169 NA | |
| HL_8R55_076 | 1/X/1538:1544 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 NA | |
| HL_8R55_078 | 1/X/1613:1616 | Mini UNCG | homologous HL_7A0S_039 HL_90436.1 | |
| HL_8R55_079 | 1/X/1657:1664 | No text annotation | homologous HL_4WF9_038 HL_28592.1 | |
| HL_8R55_080 | 1/X/1675:1681 | GNRA | homologous HL_5J7L_174 NA | |
| HL_8R55_081 | 1/X/1736:1741 | UNCG | homologous HL_4WF9_040 HL_61337.1 | |
| HL_8R55_082 | 1/X/1764:1769 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_8R55_083 | 1/X/1781:1785 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_8R55_084 | 1/X/1806:1816 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_8R55_085 | 1/X/1835:1840 | No text annotation | homologous HL_4WF9_044 NA | |
| HL_8R55_087 | 1/X/1939:1949 | No text annotation | ||
| HL_8R55_088 | 1/X/1978:1986 | No text annotation | homologous HL_4WF9_046 HL_61418.1 | |
| HL_8R55_089 | 1/X/2056:2065 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
| HL_8R55_091 | 1/X/2238:2244 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_8R55_092 | 1/X/2277:2285 | No text annotation | homologous HL_7A0S_052 HL_11974.1 | |
| HL_8R55_093 | 1/X/2293:2305 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_8R55_112 | 1/X/2333:2341 | No text annotation | homologous HL_5J7L_219 NA | |
| HL_8R55_095 | 1/X/2353:2360 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_8R55_096 | 1/X/2384:2391 | GNRA with extra cWW | homologous HL_4WF9_053 HL_45359.1 | |
| HL_8R55_097 | 1/X/2403:2408 | GNRA | homologous HL_7A0S_057 HL_34789.1 | |
| HL_8R55_098 | 1/X/2433:2442 | No text annotation | homologous HL_4WF9_055 HL_51853.1 | |
| HL_8R55_099 | 1/X/2500:2508 | No text annotation | homologous HL_7A0S_059 HL_52011.1 | |
| HL_8R55_100 | 1/X/2557:2564 | GNRA variation | homologous HL_5J7L_194 NA | |
| HL_8R55_101 | 1/X/2580:2586 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_8R55_102 | 1/X/2623:2628 | GNRA | homologous HL_7A0S_062 HL_34789.1 | |
| HL_8R55_103 | 1/X/2687:2692 | GNRA | homologous HL_7RQB_064 NA | |
| HL_8R55_104 | 1/X/2730:2735 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_12125.1 | |
| HL_8R55_105 | 1/X/2774:2788 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_8R55_107 | 1/X/2844:2852 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_8R55_108 | 1/X/2881:2886 | GNRA | homologous HL_4WF9_065 HL_34789.1 | |
| HL_8R55_109 | 1/Y/36:42 | No text annotation | homologous HL_5J7L_203 NA | |
| HL_8R55_110 | 1/Y/84:88 | Mini UNCG | homologous HL_5J7L_204 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8R55_003 | T-loop with 2 stacked bulged bases | ||
| HL_8R55_005 | No text annotation | ||
| HL_8R55_006 | GNRA | ||
| HL_8R55_008 | UNCG | ||
| HL_8R55_012 | UNCG | ||
| HL_8R55_013 | GNRA | ||
| HL_8R55_015 | No text annotation | ||
| HL_8R55_021 | No text annotation | ||
| HL_8R55_113 | No text annotation | ||
| HL_8R55_025 | No text annotation | ||
| HL_8R55_026 | UNCG | ||
| HL_8R55_029 | T-loop related | ||
| HL_8R55_030 | GNRA | ||
| HL_8R55_034 | No text annotation | ||
| HL_8R55_047 | Externally structured | ||
| HL_8R55_064 | No text annotation | ||
| HL_8R55_067 | No text annotation | ||
| HL_8R55_068 | No text annotation | ||
| HL_8R55_069 | No text annotation | ||
| HL_8R55_077 | No text annotation | ||
| HL_8R55_086 | GNRA variation | ||
| HL_8R55_090 | No text annotation | ||
| HL_8R55_094 | No text annotation | ||
| HL_8R55_106 | Externally structured |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8R55_001 | 1/A/32:34, 1/A/561:562 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_8R55_002 | 1/A/46:47, 1/A/404:406 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_8R55_003 | 1/A/49:54, 1/A/367:369 | No text annotation | homologous IL_5J7L_003 NA | |
| IL_8R55_004 | 1/A/56:58, 1/A/364:365 | Minor groove platform | homologous IL_4LFB_004 IL_34520.1 | |
| IL_8R55_005 | 1/A/65:68, 1/A/101:102 | Multiple bulged bases | homologous IL_5J7L_005 NA | |
| IL_8R55_007 | 1/A/73:78, 1/A/91:96 | No text annotation | ||
| IL_8R55_009 | 1/A/127:130, 1/A/239:240 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.1 | |
| IL_8R55_010 | 1/A/131:135, 1/A/235:238 | No text annotation | homologous IL_4LFB_008 IL_60988.1 | |
| IL_8R55_011 | 1/A/146:152, 1/A/167:174 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
| IL_8R55_013 | 1/A/250:255, 1/A/285:292 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
| IL_8R55_014 | 1/A/257:260, 1/A/282:283 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_8R55_015 | 1/A/300:301, 1/A/312:316 | C-loop | homologous IL_5J7L_016 NA | |
| IL_8R55_016 | 1/A/375:377, 1/A/400:401 | Single bulged U | homologous IL_4LFB_014 IL_97561.1 | |
| IL_8R55_017 | 1/A/379:383, 1/A/397:398 | C-loop | geometric IL_6CZR_127 NA | |
| IL_8R55_018 | 1/A/383:384, 1/A/395:397 | Single bulged G | homologous IL_5J7L_019 NA | |
| IL_8R55_020 | 1/A/454:458, 1/A/492:497 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_6CZR_130 NA | |
| IL_8R55_021 | 1/A/458:464, 1/A/486:492 | No text annotation | homologous IL_5J7L_023 NA | |
| IL_8R55_023 | 1/A/513:520, 1/A/549:550 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_11411.1 | |
| IL_8R55_024 | 1/A/524:530, 1/A/537:545 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_8R55_025 | 1/A/578:584, 1/A/890:891 | No text annotation | homologous IL_5J7L_026 NA | |
| IL_8R55_026 | 1/A/589:593, 1/A/766:770 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_05821.1 | |
| IL_8R55_190 | 1/A/603:605, 1/A/653:654 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_8R55_029 | 1/A/606:607, 1/A/649:652 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_73108.1 | |
| IL_8R55_030 | 1/A/613:614, 1/A/641:643 | Single bulged U | geometric IL_2OIU_003 IL_97561.1 | |
| IL_8R55_191 | 1/A/613:621, 1/A/637:643 | No text annotation | ||
| IL_8R55_031 | 1/A/614:621, 1/A/637:641 | No text annotation | geometric IL_5J7L_030 NA | |
| IL_8R55_032 | 1/A/663:664, 1/A/760:763 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_74641.1 | |
| IL_8R55_034 | 1/A/671:675, 1/A/749:752 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_8R55_192 | 1/A/682:686, 1/A/722:726 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_71154.1 | |
| IL_8R55_036 | 1/A/693:697, 1/A/708:715 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_8R55_037 | 1/A/783:787, 1/A/813:814 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_8R55_038 | 1/A/788:792, 1/A/808:812 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_05821.1 | |
| IL_8R55_039 | 1/A/897:904, 1/A/915:920 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_8R55_040 | 1/A/932:933, 1/A/1402:1404 | Single bulged A | homologous IL_6CZR_147 NA | |
| IL_8R55_041 | 1/A/935:937, 1/A/1399:1400 | Single bulged G | homologous IL_4LFB_036 IL_28408.1 | |
| IL_8R55_042 | 1/A/943:945, 1/A/1389:1393 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_8R55_043 | 1/A/963:964, 1/A/1235:1237 | Minor groove platform | homologous IL_4LFB_038 IL_34520.1 | |
| IL_8R55_044 | 1/A/1003:1007, 1/A/1054:1055 | Minor groove platform | homologous IL_4LFB_039 IL_61370.1 | |
| IL_8R55_047 | 1/A/1057:1061, 1/A/1216:1219 | No text annotation | ||
| IL_8R55_048 | 1/A/1061:1067, 1/A/1211:1216 | No text annotation | ||
| IL_8R55_193 | 1/A/1061:1068, 1/A/1208:1216 | No text annotation | ||
| IL_8R55_049 | 1/A/1067:1068, 1/A/1208:1211 | Multiple bulged bases | geometric IL_4YAZ_007 IL_71421.1 | |
| IL_8R55_050 | 1/A/1070:1071, 1/A/1204:1206 | Single bulged A | homologous IL_5J7L_049 NA | |
| IL_8R55_051 | 1/A/1071:1073, 1/A/1202:1204 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_8R55_052 | 1/A/1134:1137, 1/A/1154:1158 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_8R55_053 | 1/A/1139:1142, 1/A/1151:1152 | Minor groove platform | homologous IL_5J7L_052 NA | |
| IL_8R55_054 | 1/A/1167:1170, 1/A/1184:1190 | No text annotation | homologous IL_5J7L_053 NA | |
| IL_8R55_055 | 1/A/1256:1262, 1/A/1293:1299 | No text annotation | homologous IL_5J7L_054 NA | |
| IL_8R55_056 | 1/A/1264:1267, 1/A/1286:1291 | 180 degree turn | homologous IL_4LFB_052 IL_08849.1 | |
| IL_8R55_057 | 1/A/1268:1272, 1/A/1281:1285 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 NA | |
| IL_8R55_058 | 1/A/1312:1317, 1/A/1338:1343 | No text annotation | homologous IL_4LFB_055 IL_57885.1 | |
| IL_8R55_059 | 1/A/1408:1410, 1/A/1511:1514 | No text annotation | homologous IL_5J7L_058 NA | |
| IL_8R55_060 | 1/A/1410:1413, 1/A/1507:1511 | No text annotation | geometric IL_4V88_464 NA | |
| IL_8R55_061 | 1/A/1414:1416, 1/A/1504:1506 | Isolated non-canonical cWW pair | geometric IL_5MWI_004 NA | |
| IL_8R55_062 | 1/A/1416:1418, 1/A/1501:1504 | Decoding loop related | geometric IL_3C3Z_002 IL_29925.1 | |
| IL_8R55_063 | 1/A/1421:1423, 1/A/1496:1498 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_8R55_064 | 1/A/1425:1428, 1/A/1491:1494 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_8R55_065 | 1/A/1433:1436, 1/A/1483:1486 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
| IL_8R55_066 | 1/A/1439:1444, 1/A/1476:1480 | Triple sheared related | geometric IL_5J7L_063 NA | |
| IL_8R55_067 | 1/A/1444:1446, 1/A/1474:1476 | No text annotation | ||
| IL_8R55_068 | 1/A/1447:1452, 1/A/1469:1473 | No text annotation | ||
| IL_8R55_069 | 1/A/1453:1457, 1/A/1465:1468 | No text annotation | ||
| IL_8R55_071 | 1/X/24:30, 1/X/556:562 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_22311.1 | |
| IL_8R55_072 | 1/X/36:37, 1/X/489:491 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_8R55_073 | 1/X/43:44, 1/X/481:483 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_8R55_194 | 1/X/56:76, 1/X/109:113 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_8R55_074 | 1/X/81:85, 1/X/97:104 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_8R55_075 | 1/X/152:153, 1/X/175:177 | Single bulged A | homologous IL_4WF9_006 IL_14190.1 | |
| IL_8R55_076 | 1/X/186:187, 1/X/215:217 | Single stack bend | homologous IL_7A0S_005 IL_15011.1 | |
| IL_8R55_195 | 1/X/186:187, 1/X/215:218 | No text annotation | geometric IL_8P9A_309 IL_18824.1 | |
| IL_8R55_077 | 1/X/191:197, 1/X/204:211 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 NA | |
| IL_8R55_078 | 1/X/241:248, 1/X/256:262 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_009 IL_62167.1 | |
| IL_8R55_081 | 1/X/336:338, 1/X/387:391 | No text annotation | homologous IL_5J7L_254 NA | |
| IL_8R55_082 | 1/X/344:346, 1/X/359:360 | Single bulged A | geometric IL_7A0S_012 IL_14190.1 | |
| IL_8R55_083 | 1/X/528:531, 1/X/542:555 | No text annotation | homologous IL_5J7L_255 NA | |
| IL_8R55_084 | 1/X/582:585, 1/X/598:601 | Double sheared | homologous IL_5J7L_256 NA | |
| IL_8R55_085 | 1/X/608:610, 1/X/619:621 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_71625.1 | |
| IL_8R55_086 | 1/X/639:641, 1/X/707:709 | Isolated non-canonical cWW pair | homologous IL_4WF9_018 IL_71625.1 | |
| IL_8R55_087 | 1/X/650:654, 1/X/664:668 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_8R55_088 | 1/X/719:721, 1/X/853:855 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_8R55_089 | 1/X/721:725, 1/X/846:853 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_8R55_090 | 1/X/744:745, 1/X/810:812 | Single bulged A | geometric IL_5J7L_261 NA | |
| IL_8R55_091 | 1/X/749:750, 1/X/775:777 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_8R55_092 | 1/X/750:754, 1/X/771:775 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_8R55_093 | 1/X/785:787, 1/X/804:805 | Major groove platform | homologous IL_4WF9_026 IL_48076.7 | |
| IL_8R55_094 | 1/X/822:824, 1/X/834:838 | Multiple bulged bases | geometric IL_4V9F_030 IL_57881.1 | |
| IL_8R55_095 | 1/X/884:885, 1/X/986:988 | Single stack bend | homologous IL_7A0S_022 IL_15011.1 | |
| IL_8R55_096 | 1/X/891:895, 1/X/977:980 | No text annotation | homologous IL_4WF9_029 IL_01742.1 | |
| IL_8R55_097 | 1/X/899:900, 1/X/971:973 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_8R55_098 | 1/X/903:909, 1/X/962:968 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_4WF9_031 IL_94128.1 | |
| IL_8R55_099 | 1/X/909:910, 1/X/960:962 | Minor groove platform | geometric IL_4V9F_034 IL_34520.1 | |
| IL_8R55_100 | 1/X/911:915, 1/X/956:959 | C-loop | homologous IL_7RQB_029 NA | |
| IL_8R55_105 | 1/X/998:1000, 1/X/1009:1011 | Isolated non-canonical cWW pair | homologous IL_7A0S_031 IL_01003.1 | |
| IL_8R55_106 | 1/X/1040:1042, 1/X/1205:1206 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_8R55_107 | 1/X/1044:1048, 1/X/1199:1203 | UAA/GAN | homologous IL_4WF9_036 IL_08938.1 | |
| IL_8R55_108 | 1/X/1050:1057, 1/X/1196:1197 | SSU/LSU pseudoknot | homologous IL_5J7L_278 NA | |
| IL_8R55_109 | 1/X/1057:1059, 1/X/1195:1196 | Single bulged U | geometric IL_7A0S_035 IL_97561.1 | |
| IL_8R55_110 | 1/X/1064:1070, 1/X/1186:1190 | Kink-turn related | geometric IL_4WF9_039 IL_57188.6 | |
| IL_8R55_111 | 1/X/1070:1076, 1/X/1170:1186 | No text annotation | geometric IL_4WF9_040 IL_50715.4 | |
| IL_8R55_112 | 1/X/1077:1080, 1/X/1167:1169 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_8R55_115 | 1/X/1237:1239, 1/X/1287:1290 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.4 | |
| IL_8R55_116 | 1/X/1243:1247, 1/X/1279:1283 | No text annotation | ||
| IL_8R55_117 | 1/X/1248:1255, 1/X/1274:1278 | Kink-turn | homologous IL_5J7L_288 NA | |
| IL_8R55_118 | 1/X/1259:1261, 1/X/1268:1270 | Intercalated cWW | homologous IL_4WF9_047 IL_61702.1 | |
| IL_8R55_119 | 1/X/1302:1309, 1/X/2040:2046 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_8R55_120 | 1/X/1349:1352, 1/X/1648:1649 | Major groove platform; stack outside cWW | homologous IL_4WF9_049 IL_74641.1 | |
| IL_8R55_121 | 1/X/1358:1362, 1/X/1370:1372 | Major groove minor groove platform with tHH | homologous IL_4WF9_050 IL_06671.1 | |
| IL_8R55_122 | 1/X/1390:1394, 1/X/1415:1419 | UAA/GAN | homologous IL_7A0S_048 IL_89021.3 | |
| IL_8R55_123 | 1/X/1396:1400, 1/X/1409:1413 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_8R55_124 | 1/X/1448:1450, 1/X/1637:1638 | Minor groove platform | geometric IL_4R4V_001 IL_34520.1 | |
| IL_8R55_125 | 1/X/1455:1462, 1/X/1629:1632 | No text annotation | ||
| IL_8R55_126 | 1/X/1463:1467, 1/X/1625:1628 | Other IL | homologous IL_4WF9_054 IL_74317.1 | |
| IL_8R55_127 | 1/X/1478:1481, 1/X/1605:1609 | No text annotation | ||
| IL_8R55_128 | 1/X/1483:1486, 1/X/1599:1603 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_8R55_129 | 1/X/1488:1490, 1/X/1596:1597 | Major groove platform | geometric IL_3OXE_003 IL_48076.7 | |
| IL_8R55_130 | 1/X/1497:1498, 1/X/1506:1508 | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_8R55_131 | 1/X/1515:1518, 1/X/1567:1571 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_8R55_132 | 1/X/1522:1525, 1/X/1560:1563 | Double sheared | geometric IL_4LFB_060 IL_58355.1 | |
| IL_8R55_134 | 1/X/1535:1537, 1/X/1545:1546 | Single bulged A | homologous IL_5J7L_302 NA | |
| IL_8R55_135 | 1/X/1573:1576, 1/X/1590:1594 | UAA/GAN variation | geometric IL_5J7L_303 NA | |
| IL_8R55_136 | 1/X/1696:1701, 1/X/2033:2035 | No text annotation | homologous IL_4WF9_062 IL_12566.5 | |
| IL_8R55_137 | 1/X/1708:1710, 1/X/2024:2026 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.1 | |
| IL_8R55_138 | 1/X/1711:1714, 1/X/2022:2023 | Major groove platform; stack outside cWW | geometric IL_4V9F_008 IL_74641.1 | |
| IL_8R55_139 | 1/X/1714:1719, 1/X/2019:2022 | Intercalated tWH | homologous IL_4WF9_065 IL_28217.1 | |
| IL_8R55_140 | 1/X/1731:1736, 1/X/1741:1747 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_8R55_141 | 1/X/1756:1761, 1/X/1772:1776 | tSH-tHW-tWW | geometric IL_5J7L_022 NA | |
| IL_8R55_142 | 1/X/1799:1800, 1/X/2009:2011 | Single bulged A | homologous IL_7A0S_064 IL_14190.1 | |
| IL_8R55_143 | 1/X/1827:1833, 1/X/1842:1850 | Kink-turn related | homologous IL_7A0S_065 IL_17069.6 | |
| IL_8R55_144 | 1/X/1866:1869, 1/X/1931:1932 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_8R55_145 | 1/X/1870:1871, 1/X/1927:1930 | Major groove intercalation | homologous IL_7A0S_067 IL_78536.1 | |
| IL_8R55_146 | 1/X/1875:1878, 1/X/1922:1923 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
| IL_8R55_147 | 1/X/1880:1884, 1/X/1916:1920 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_8R55_148 | 1/X/1885:1889, 1/X/1911:1915 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_8R55_149 | 1/X/1893:1896, 1/X/1903:1907 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_8R55_150 | 1/X/1962:1963, 1/X/1993:1996 | Bulged stacked bases | geometric IL_7A0S_071 IL_24886.1 | |
| IL_8R55_151 | 1/X/1963:1974, 1/X/1990:1993 | No text annotation | homologous IL_4WF9_077 IL_84014.1 | |
| IL_8R55_152 | 1/X/2079:2081, 1/X/2646:2647 | Major groove platform | homologous IL_7A0S_073 IL_48076.7 | |
| IL_8R55_153 | 1/X/2083:2085, 1/X/2641:2644 | No text annotation | homologous IL_4WF9_079 IL_80025.1 | |
| IL_8R55_154 | 1/X/2096:2098, 1/X/2471:2472 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_8R55_155 | 1/X/2099:2100, 1/X/2467:2470 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_8R55_156 | 1/X/2110:2112, 1/X/2265:2268 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_8R55_206 | 1/X/2123:2133, 1/X/2214:2224 | No text annotation | ||
| IL_8R55_160 | 1/X/2231:2233, 1/X/2249:2250 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_8R55_161 | 1/X/2379:2382, 1/X/2393:2396 | Double sheared | homologous IL_5J7L_333 NA | |
| IL_8R55_162 | 1/X/2430:2432, 1/X/2443:2444 | Single bulged U | homologous IL_4WF9_088 IL_97561.1 | |
| IL_8R55_163 | 1/X/2482:2483, 1/X/2527:2529 | Single stack bend | geometric IL_4WF9_089 IL_15011.1 | |
| IL_8R55_164 | 1/X/2483:2484, 1/X/2525:2527 | Major groove platform | homologous IL_4WF9_090 IL_48076.7 | |
| IL_8R55_165 | 1/X/2486:2488, 1/X/2522:2523 | Major groove platform | homologous IL_4WF9_091 IL_48076.7 | |
| IL_8R55_166 | 1/X/2488:2490, 1/X/2518:2522 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_8R55_167 | 1/X/2495:2499, 1/X/2509:2513 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_8R55_168 | 1/X/2536:2537, 1/X/2609:2611 | Major groove platform | homologous IL_4WF9_094 IL_46637.1 | |
| IL_8R55_169 | 1/X/2539:2541, 1/X/2603:2607 | Isolated non-canonical cWW with bulges | homologous IL_4WF9_095 IL_68118.1 | |
| IL_8R55_202 | 1/X/2539:2542, 1/X/2600:2607 | No text annotation | ||
| IL_8R55_170 | 1/X/2541:2542, 1/X/2600:2603 | Multiple bulged bases | geometric IL_7RQB_098 NA | |
| IL_8R55_171 | 1/X/2551:2552, 1/X/2569:2572 | Major groove platform with intercalation | homologous IL_7A0S_091 IL_94991.1 | |
| IL_8R55_172 | 1/X/2620:2621, 1/X/2630:2632 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_8R55_173 | 1/X/2665:2669, 1/X/2803:2811 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.4 | |
| IL_8R55_174 | 1/X/2681:2687, 1/X/2692:2697 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_8R55_175 | 1/X/2709:2713, 1/X/2754:2756 | C-loop | homologous IL_7RQB_104 NA | |
| IL_8R55_176 | 1/X/2716:2720, 1/X/2747:2751 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_82016.1 | |
| IL_8R55_177 | 1/X/2724:2725, 1/X/2740:2743 | Multiple bulged bases | homologous IL_4WF9_103 IL_44609.1 | |
| IL_8R55_178 | 1/X/2766:2771, 1/X/2791:2796 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_8R55_179 | 1/X/2861:2863, 1/X/2905:2907 | Isolated non-canonical cWW pair | geometric IL_4V9F_105 IL_01003.1 | |
| IL_8R55_180 | 1/X/2863:2864, 1/X/2903:2905 | Major groove intercalation | homologous IL_7A0S_099 IL_28408.1 | |
| IL_8R55_181 | 1/X/2868:2870, 1/X/2896:2899 | No text annotation | homologous IL_4WF9_107 IL_05502.1 | |
| IL_8R55_182 | 1/X/2872:2877, 1/X/2890:2894 | tHS double platform | homologous IL_4WF9_108 IL_48489.1 | |
| IL_8R55_183 | 1/Y/15:16, 1/Y/63:65 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_8R55_184 | 1/Y/21:27, 1/Y/53:58 | No text annotation | ||
| IL_8R55_186 | 1/Y/32:36, 1/Y/42:46 | Symmetric double minor groove platform | geometric IL_4V9F_104 IL_58103.12 | |
| IL_8R55_187 | 1/Y/69:77, 1/Y/95:103 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_8R55_188 | 1/Y/78:80, 1/Y/92:94 | Isolated non-canonical cWW pair | geometric IL_3RW6_004 IL_01003.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8R55_006 | Isolated non-canonical cWW pair | ||
| IL_8R55_008 | No text annotation | ||
| IL_8R55_012 | Tandem non-canonical cWW pairs | ||
| IL_8R55_189 | No text annotation | ||
| IL_8R55_019 | No text annotation | ||
| IL_8R55_022 | Isolated non-canonical cWW pair | ||
| IL_8R55_027 | Isolated non-canonical cWW pair | ||
| IL_8R55_028 | Major groove platform with extra pair | ||
| IL_8R55_204 | Major groove platform | ||
| IL_8R55_033 | Major groove platform with extra pair | ||
| IL_8R55_035 | No text annotation | ||
| IL_8R55_045 | Single stack bend | ||
| IL_8R55_046 | No text annotation | ||
| IL_8R55_070 | Isolated non-canonical cWW pair | ||
| IL_8R55_079 | No text annotation | ||
| IL_8R55_080 | Major groove minor groove platform; mini C-loop | ||
| IL_8R55_205 | No text annotation | ||
| IL_8R55_196 | No text annotation | ||
| IL_8R55_101 | Isolated cWS basepair | ||
| IL_8R55_102 | Double sheared with non-canonical cWW | ||
| IL_8R55_103 | No text annotation | ||
| IL_8R55_197 | No text annotation | ||
| IL_8R55_104 | Single stack bend | ||
| IL_8R55_113 | Kink-turn | ||
| IL_8R55_198 | No text annotation | ||
| IL_8R55_199 | No text annotation | ||
| IL_8R55_114 | No text annotation | ||
| IL_8R55_133 | No text annotation | ||
| IL_8R55_200 | No text annotation | ||
| IL_8R55_157 | No text annotation | ||
| IL_8R55_158 | No text annotation | ||
| IL_8R55_201 | No text annotation | ||
| IL_8R55_159 | No text annotation | ||
| IL_8R55_203 | No text annotation | ||
| IL_8R55_185 | Major groove minor groove platform; mini C-loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8R55_020 | 1/A/48:49, 1/A/369:375, 1/A/401:403 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_8R55_021 | 1/A/48:54, 1/A/367:375, 1/A/401:403 | No text annotation | homologous J3_5J7L_050 NA | |
| J3_8R55_022 | 1/A/595:597, 1/A/660:663, 1/A/763:764 | No text annotation | homologous J3_4LFB_011 J3_01633.1 | |
| J3_8R55_023 | 1/A/595:597, 1/A/660:664, 1/A/760:764 | No text annotation | homologous J3_4LFB_015 J3_17385.5 | |
| J3_8R55_024 | 1/A/681:682, 1/A/726:734, 1/A/741:743 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_8R55_001 | 1/A/835:838, 1/A/867:871, 1/A/878:884 | No text annotation | homologous J3_4LFB_001 J3_02285.1 | |
| J3_8R55_002 | 1/A/946:949, 1/A/1353:1359, 1/A/1381:1388 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_8R55_003 | 1/A/953:956, 1/A/1244:1246, 1/A/1346:1349 | No text annotation | homologous J3_5J7L_005 NA | |
| J3_8R55_004 | 1/A/965:972, 1/A/983:994, 1/A/1230:1234 | No text annotation | homologous J3_5J7L_006 NA | |
| J3_8R55_005 | 1/A/1000:1003, 1/A/1055:1057, 1/A/1219:1224 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_8R55_025 | 1/A/1000:1007, 1/A/1054:1057, 1/A/1219:1224 | No text annotation | homologous J3_4LFB_016 J3_28881.1 | |
| J3_8R55_006 | 1/A/1073:1078, 1/A/1117:1123, 1/A/1196:1202 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J3_8R55_037 | 1/A/1083:1084, 1/A/1093:1096, 1/A/1109:1112 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_8R55_007 | 1/A/1126:1128, 1/A/1164:1167, 1/A/1190:1193 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_8R55_028 | 1/A/1126:1128, 1/A/1164:1170, 1/A/1184:1193 | No text annotation | homologous J3_5J7L_054 NA | |
| J3_8R55_008 | 1/A/1246:1250, 1/A/1305:1312, 1/A/1343:1346 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J3_8R55_029 | 1/X/30:31, 1/X/521:528, 1/X/555:556 | No text annotation | geometric J3_5TBW_002 NA | |
| J3_8R55_030 | 1/X/30:31, 1/X/521:531, 1/X/542:556 | No text annotation | homologous J3_4WF9_011 J3_17917.1 | |
| J3_8R55_031 | 1/X/32:35, 1/X/492:508, 1/X/515:520 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_8R55_009 | 1/X/56:67, 1/X/74:76, 1/X/109:113 | No text annotation | homologous J3_4WF9_001 J3_47707.1 | |
| J3_8R55_032 | 1/X/272:276, 1/X/295:302, 1/X/416:417 | No text annotation | homologous J3_4WF9_022 J3_97971.2 | |
| J3_8R55_010 | 1/X/730:736, 1/X/820:822, 1/X/838:841 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_8R55_011 | 1/X/745:747, 1/X/779:783, 1/X/807:810 | No text annotation | homologous J3_4WF9_003 J3_69816.1 | |
| J3_8R55_013 | 1/X/1337:1342, 1/X/1670:1672, 1/X/1684:1687 | No text annotation | homologous J3_7A0S_006 J3_32852.7 | |
| J3_8R55_014 | 1/X/1344:1348, 1/X/1650:1656, 1/X/1665:1668 | No text annotation | homologous J3_4WF9_005 J3_68164.1 | |
| J3_8R55_038 | 1/X/1383:1389, 1/X/1420:1424, 1/X/1441:1442 | No text annotation | homologous J3_7A0S_018 J3_94309.1 | |
| J3_8R55_034 | 1/X/1470:1475, 1/X/1612:1613, 1/X/1616:1622 | No text annotation | homologous J3_9DFE_013 J3_34864.3 | |
| J3_8R55_015 | 1/X/2120:2122, 1/X/2225:2230, 1/X/2251:2257 | No text annotation | homologous J3_4WF9_007 J3_07703.1 | |
| J3_8R55_035 | 1/X/2311:2313, 1/X/2413:2424, 1/X/2450:2456 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_8R55_016 | 1/X/2324:2328, 1/X/2346:2352, 1/X/2361:2366 | No text annotation | homologous J3_5J7L_071 NA | |
| J3_8R55_017 | 1/X/2546:2549, 1/X/2574:2576, 1/X/2590:2596 | No text annotation | homologous J3_4WF9_009 J3_32601.6 | |
| J3_8R55_018 | 1/X/2838:2840, 1/X/2856:2861, 1/X/2907:2912 | No text annotation | ||
| J3_8R55_019 | 1/Y/9:14, 1/Y/66:68, 1/Y/104:107 | No text annotation | ||
| J4_8R55_002 | 1/A/113:121, 1/A/246:248, 1/A/294:297, 1/A/319:320 | No text annotation | ||
| J4_8R55_017 | 1/A/141:143, 1/A/177:183, 1/A/206:212, 1/A/227:229 | No text annotation | ||
| J4_8R55_004 | 1/A/584:586, 1/A/773:778, 1/A/819:830, 1/A/889:890 | No text annotation | homologous J4_5J7L_003 NA | |
| J4_8R55_005 | 1/U/7:10, 1/U/25:27, 1/U/43:49, 1/U/65:66 | tRNA junction | homologous J4_7VNV_001 J4_58311.1 | |
| J4_8R55_006 | 1/X/271:272, 1/X/417:422, 1/X/446:453, 1/X/468:471 | No text annotation | homologous J4_4WF9_001 J4_94698.1 | |
| J4_8R55_007 | 1/X/340:344, 1/X/360:363, 1/X/367:369, 1/X/381:385 | No text annotation | homologous J4_9DFE_002 J4_16174.1 | |
| J4_8R55_008 | 1/X/645:648, 1/X/670:674, 1/X/681:684, 1/X/696:703 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_8R55_009 | 1/X/1310:1315, 1/X/1333:1334, 1/X/1690:1693, 1/X/2038:2039 | No text annotation | homologous J4_4WF9_004 J4_64571.6 | |
| J4_8R55_010 | 1/X/1349:1353, 1/X/1377:1382, 1/X/1443:1444, 1/X/1642:1649 | No text annotation | homologous J4_4WF9_005 J4_77353.1 | |
| J4_8R55_011 | 1/X/1352:1353, 1/X/1377:1382, 1/X/1443:1444, 1/X/1642:1648 | No text annotation | homologous J4_4WF9_006 J4_48150.1 | |
| J4_8R55_018 | 1/X/1491:1492, 1/X/1513:1514, 1/X/1572:1573, 1/X/1594:1595 | No text annotation | homologous J4_5J7L_024 NA | |
| J4_8R55_012 | 1/X/1491:1493, 1/X/1512:1514, 1/X/1572:1573, 1/X/1594:1595 | No text annotation | ||
| J4_8R55_013 | 1/X/1801:1805, 1/X/1817:1821, 1/X/1856:1859, 1/X/2004:2008 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_8R55_014 | 1/X/1862:1864, 1/X/1934:1935, 1/X/1953:1962, 1/X/1996:2001 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_8R55_015 | 1/X/2314:2318, 1/X/2372:2376, 1/X/2399:2401, 1/X/2410:2412 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_8R55_016 | 1/X/2672:2675, 1/X/2703:2705, 1/X/2760:2764, 1/X/2798:2800 | No text annotation | homologous J4_5J7L_028 NA | |
| J5_8R55_001 | 1/A/38:41, 1/A/411:414, 1/A/444:449, 1/A/502:509, 1/A/554:557 | No text annotation | ||
| J5_8R55_002 | 1/A/60:63, 1/A/104:111, 1/A/322:324, 1/A/345:347, 1/A/358:362 | No text annotation | homologous J5_4LFB_002 J5_58574.1 | |
| J5_8R55_003 | 1/X/47:54, 1/X/115:120, 1/X/129:130, 1/X/149:151, 1/X/178:180 | No text annotation | homologous J5_4WF9_001 J5_27223.1 | |
| J5_8R55_004 | 1/X/271:276, 1/X/295:302, 1/X/416:422, 1/X/446:453, 1/X/468:471 | No text annotation | ||
| J5_8R55_005 | 1/X/577:579, 1/X/604:608, 1/X/621:623, 1/X/1301:1302, 1/X/2046:2047 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_8R55_006 | 1/X/628:633, 1/X/715:718, 1/X/856:859, 1/X/1236:1237, 1/X/1290:1296 | No text annotation | homologous J5_9DFE_004 J5_74302.6 | |
| J5_8R55_011 | 1/X/1711:1727, 1/X/1751:1752, 1/X/1780:1781, 1/X/1785:1793, 1/X/2017:2023 | No text annotation | ||
| J5_8R55_012 | 1/X/1714:1727, 1/X/1751:1752, 1/X/1780:1781, 1/X/1785:1793, 1/X/2017:2022 | No text annotation | ||
| J5_8R55_009 | 1/X/2086:2093, 1/X/2475:2482, 1/X/2529:2536, 1/X/2611:2617, 1/X/2635:2640 | No text annotation | ||
| J5_8R55_013 | 1/X/2103:2106, 1/X/2272:2275, 1/X/2287:2288, 1/X/2310:2311, 1/X/2456:2464 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
| J6_8R55_001 | 1/X/45:46, 1/X/181:186, 1/X/218:227, 1/X/234:238, 1/X/265:269, 1/X/473:480 | No text annotation | ||
| J6_8R55_003 | 1/X/2103:2106, 1/X/2272:2275, 1/X/2287:2288, 1/X/2310:2313, 1/X/2413:2424, 1/X/2450:2464 | No text annotation | ||
| J6_8R55_002 | 1/X/2103:2107, 1/X/2271:2275, 1/X/2287:2288, 1/X/2310:2313, 1/X/2413:2424, 1/X/2450:2464 | No text annotation | ||
| J7_8R55_001 | 1/X/864:869, 1/X/882:883, 1/X/989:992, 1/X/1017:1022, 1/X/1033:1037, 1/X/1209:1210, 1/X/1226:1231 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8R55_036 | No text annotation | ||
| J3_8R55_026 | No text annotation | ||
| J3_8R55_027 | No text annotation | ||
| J3_8R55_012 | No text annotation | ||
| J3_8R55_033 | No text annotation | ||
| J4_8R55_001 | tRNA junction | ||
| J4_8R55_003 | No text annotation | ||
| J5_8R55_007 | No text annotation | ||
| J5_8R55_008 | No text annotation | ||
| J5_8R55_010 | No text annotation |
Coloring options: