HL_8R55_038
3D structure
- PDB id
- 8R55 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacillus subtilis MutS2-collided disome complex (stalled 70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.57 Å
Loop
- Sequence
- GUUCGAGUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8R55_038 not in the Motif Atlas
- Homologous match to HL_4V8N_145
- Geometric discrepancy: 0.3936
- The information below is about HL_4V8N_145
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8R55|1|U|G|53
8R55|1|U|U|54
8R55|1|U|U|55
8R55|1|U|C|56
8R55|1|U|G|57
8R55|1|U|A|58
8R55|1|U|G|59
8R55|1|U|U|60
8R55|1|U|C|61
Current chains
- Chain U
- tRNA (77-MER)
Nearby chains
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
- Chain c
- Large ribosomal subunit protein uL5
- Chain j
- Large ribosomal subunit protein uL16
Coloring options: