HL_8R55_048

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8R55|1|X|A|355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R55_048 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1396

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8R55|1|X|C|349
8R55|1|X|U|350
8R55|1|X|G|351
8R55|1|X|G|352
8R55|1|X|A|353
8R55|1|X|A|354
8R55|1|X|A|355
8R55|1|X|G|356

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain t

Large ribosomal subunit protein uL24