3D structure

PDB id
8R55 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacillus subtilis MutS2-collided disome complex (stalled 70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.57 Å

Loop

Sequence
GUGAGAAUC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8R55_071 not in the Motif Atlas
Homologous match to HL_4WF9_032
Geometric discrepancy: 0.1212
The information below is about HL_4WF9_032
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_33597.1
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
96

Unit IDs

8R55|1|X|G|1320
8R55|1|X|U|1321
8R55|1|X|G|1322
8R55|1|X|A|1323
8R55|1|X|G|1324
8R55|1|X|A|1325
8R55|1|X|A|1326
8R55|1|X|U|1327
8R55|1|X|C|1328

Current chains

Chain X
23S RNA (2887-MER)

Nearby chains

Chain 0
50S ribosomal protein L32
Chain k
Large ribosomal subunit protein bL17
Chain r
Large ribosomal subunit protein uL22

Coloring options:


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