HL_8R55_072

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

8R55|1|X|C|1364, 8R55|1|X|U|1368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R55_072 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.206

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

8R55|1|X|G|1363
8R55|1|X|C|1364
8R55|1|X|U|1365
8R55|1|X|C|1366
8R55|1|X|G|1367
8R55|1|X|U|1368
8R55|1|X|C|1369

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain k

Large ribosomal subunit protein bL17

Chain r

Large ribosomal subunit protein uL22