HL_8R55_076

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

8R55|1|X|C|1539, 8R55|1|X|U|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R55_076 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.4824

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8R55|1|X|G|1538
8R55|1|X|C|1539
8R55|1|X|A|1540
8R55|1|X|A|1541
8R55|1|X|A|1542
8R55|1|X|U|1543
8R55|1|X|C|1544

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain Z

Large ribosomal subunit protein uL2