HL_8R55_095

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

UGUAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R55_095 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.1689

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

8R55|1|X|U|2353
8R55|1|X|G|2354
8R55|1|X|U|2355
8R55|1|X|A|2356
8R55|1|X|A|2357
8R55|1|X|A|2358
8R55|1|X|G|2359
8R55|1|X|G|2360

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain U

Transfer RNA; tRNA

Chain j

Large ribosomal subunit protein uL16

Chain u

Large ribosomal subunit protein bL27