HL_8R55_111

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

GUAUUGGAUAUC

Length

12 nucleotides

Bulged bases

8R55|1|X|U|1500, 8R55|1|X|U|1501, 8R55|1|X|U|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R55_111 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.3358

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8R55|1|X|G|1497
8R55|1|X|U|1498
8R55|1|X|A|1499
8R55|1|X|U|1500
8R55|1|X|U|1501
8R55|1|X|G|1502
8R55|1|X|G|1503
8R55|1|X|A|1504
8R55|1|X|U|1505
8R55|1|X|A|1506
8R55|1|X|U|1507
8R55|1|X|C|1508

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain k

Large ribosomal subunit protein bL17