HL_8R6C_008

3D structure

PDB id

8R6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R6C_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0751

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8R6C|1|A|A|320
8R6C|1|A|A|321
8R6C|1|A|C|322
8R6C|1|A|U|323
8R6C|1|A|G|324
8R6C|1|A|A|325
8R6C|1|A|G|326
8R6C|1|A|A|327
8R6C|1|A|C|328
8R6C|1|A|A|329
8R6C|1|A|C|330
8R6C|1|A|G|331
8R6C|1|A|G|332
8R6C|1|A|U|333

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20