HL_8R6C_013

3D structure

PDB id

8R6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCAGCC(G7M)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R6C_013 not in the Motif Atlas

Geometric match to HL_2ZZN_004

Geometric discrepancy: 0.1585

The information below is about HL_2ZZN_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_64640.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8R6C|1|A|G|521
8R6C|1|A|C|522
8R6C|1|A|A|523
8R6C|1|A|G|524
8R6C|1|A|C|525
8R6C|1|A|C|526
8R6C|1|A|G7M|527
8R6C|1|A|C|528

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain X

mRNA