HL_8R6C_027

3D structure

PDB id

8R6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R6C_027 not in the Motif Atlas

Homologous match to HL_5J7L_027

Geometric discrepancy: 0.0913

The information below is about HL_5J7L_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8R6C|1|A|C|1265
8R6C|1|A|G|1266
8R6C|1|A|C|1267
8R6C|1|A|G|1268
8R6C|1|A|A|1269
8R6C|1|A|G|1270

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13

Chain S

Small ribosomal subunit protein uS19