HL_8R6C_065

3D structure

PDB id

8R6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R6C_065 not in the Motif Atlas

Homologous match to HL_5J7L_164

Geometric discrepancy: 0.0809

The information below is about HL_5J7L_164

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8R6C|1|a|U|1222
8R6C|1|a|G|1223
8R6C|1|a|U|1224
8R6C|1|a|G|1225
8R6C|1|a|A|1226
8R6C|1|a|G|1227

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L15

Chain p

Large ribosomal subunit protein bL20

Chain q

Large ribosomal subunit protein bL21