3D structure

PDB id
8R6C (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
G(PSU)AAC(3TD)A(PSU)AAC
Length
11 nucleotides
Bulged bases
8R6C|1|a|A|1913, 8R6C|1|a|C|1914, 8R6C|1|a|A|1916
QA status
Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8R6C_082 not in the Motif Atlas
Homologous match to HL_5J7L_181
Geometric discrepancy: 0.0587
The information below is about HL_5J7L_181
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_25847.2
Basepair signature
cWW-F-cSH-tHW-F-F-F
Number of instances in this motif group
3

Unit IDs

8R6C|1|a|G|1910
8R6C|1|a|PSU|1911
8R6C|1|a|A|1912
8R6C|1|a|A|1913
8R6C|1|a|C|1914
8R6C|1|a|3TD|1915
8R6C|1|a|A|1916
8R6C|1|a|PSU|1917
8R6C|1|a|A|1918
8R6C|1|a|A|1919
8R6C|1|a|C|1920

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain 6
Paenilamicin B2
Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain X
mRNA
Chain Y
Transfer RNA; tRNA
Chain Z
Transfer RNA; tRNA

Coloring options:


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