HL_8R6C_095

3D structure

PDB id

8R6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R6C_095 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.1123

The information below is about HL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8R6C|1|a|C|2551
8R6C|1|a|OMU|2552
8R6C|1|a|G|2553
8R6C|1|a|U|2554
8R6C|1|a|U|2555
8R6C|1|a|C|2556
8R6C|1|a|G|2557

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain Y

Transfer RNA; tRNA

Chain j

Large ribosomal subunit protein uL14