HL_8R8M_037

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUCGAGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R8M_037 not in the Motif Atlas

Homologous match to HL_5HR7_006

Geometric discrepancy: 0.1455

The information below is about HL_5HR7_006

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8R8M|1|Z|G|62
8R8M|1|Z|U|63
8R8M|1|Z|U|64
8R8M|1|Z|C|65
8R8M|1|Z|G|66
8R8M|1|Z|A|67
8R8M|1|Z|G|68
8R8M|1|Z|U|69
8R8M|1|Z|C|70

Current chains

Chain Z

Leucine-tRNA

Nearby chains