HL_8R8M_053

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

8R8M|1|a|U|545, 8R8M|1|a|U|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R8M_053 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.2703

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8R8M|1|a|C|544
8R8M|1|a|U|545
8R8M|1|a|U|546
8R8M|1|a|A|547
8R8M|1|a|G|548
8R8M|1|a|G|549

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain q

Large ribosomal subunit protein bL21