HL_8R8M_070
3D structure
- PDB id
- 8R8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CGACGGUUG
- Length
- 9 nucleotides
- Bulged bases
- 8R8M|1|a|A|1453, 8R8M|1|a|C|1454
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8R8M_070 not in the Motif Atlas
- Homologous match to HL_5J7L_169
- Geometric discrepancy: 0.0582
- The information below is about HL_5J7L_169
- Detailed Annotation
- Mini UNCG with extended bulge
- Broad Annotation
- Mini UNCG with extended bulge
- Motif group
- HL_22622.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8R8M|1|a|C|1451
8R8M|1|a|G|1452
8R8M|1|a|A|1453
8R8M|1|a|C|1454
8R8M|1|a|G|1455
8R8M|1|a|G|1456
8R8M|1|a|U|1457
8R8M|1|a|U|1458
8R8M|1|a|G|1459
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain m
- Large ribosomal subunit protein bL17
Coloring options: